hashemifar / DPPI
A convolutional neural network to predict PPI interactions
☆41Updated 6 years ago
Alternatives and similar repositories for DPPI:
Users that are interested in DPPI are comparing it to the libraries listed below
- Analysis and figure code from Alley et al. 2019.☆58Updated last year
- Unconstrained lattice antibody-antigen bindings generator☆103Updated 7 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆57Updated 3 years ago
- Paratope Prediction using Deep Learning☆59Updated last year
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated 9 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Orientation of the protein-protein interaction network using network diffusion techniques☆15Updated 3 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- ☆58Updated 7 years ago
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆66Updated 6 months ago
- This repository contains the stand-alone tool for MusiteDeep server☆29Updated 4 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- Evolutionary velocity with protein language models☆84Updated last year
- ☆35Updated 2 years ago
- ☆23Updated last year
- Multi-task and masked language model-based protein sequence embedding models.☆99Updated 3 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆44Updated 5 years ago
- ☆108Updated 2 years ago
- ☆24Updated last year
- A generative latent variable model for biological sequence families.☆213Updated 2 years ago
- ☆25Updated 5 years ago
- Neural networks for deep mutational scanning data☆67Updated 3 months ago
- inferring sequence-structure motifs using deep learning☆37Updated last year
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆49Updated 3 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 2 years ago
- ☆33Updated last month
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆65Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆69Updated 10 months ago
- Analysis workflow for investigating the structural context of PTMs☆11Updated last year
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated 6 months ago