hashemifar / DPPILinks
A convolutional neural network to predict PPI interactions
☆42Updated 7 years ago
Alternatives and similar repositories for DPPI
Users that are interested in DPPI are comparing it to the libraries listed below
Sorting:
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 4 years ago
- Analysis and figure code from Alley et al. 2019.☆59Updated 2 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- Evolutionary velocity with protein language models☆94Updated this week
- ☆59Updated 8 years ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆51Updated 4 years ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆54Updated 4 months ago
- Function prediction using a deep ontology-aware classifier☆85Updated 3 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- A sequence-based pan model for peptide-MHC II binding affinity prediction.☆21Updated 3 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆54Updated 6 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- Amino Acid Embedding Representation as Machine Learning Features☆20Updated 7 years ago
- ☆23Updated 2 years ago
- Protein function prediction using a variational autoencoder☆95Updated 7 years ago
- Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequences☆31Updated 4 years ago
- Python package and command line tool for epitope prediction☆52Updated last year
- Code for the analyses in the human reference interactome paper.☆28Updated 3 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- ☆127Updated 4 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆104Updated 4 years ago
- Language modeling of viral evolution☆147Updated 2 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆74Updated 2 years ago
- Analysis workflow for investigating the structural context of PTMs☆11Updated last year
- This repository contains the stand-alone tool for MusiteDeep server☆34Updated 5 years ago
- deep protein solubility prediction☆40Updated 6 years ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆106Updated 6 months ago
- ☆110Updated 3 years ago
- ☆49Updated last year