pth1993 / DeepCE
A deep learning framework for high-throughput mechanism-driven phenotype screening
☆49Updated 4 years ago
Alternatives and similar repositories for DeepCE:
Users that are interested in DeepCE are comparing it to the libraries listed below
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated 11 months ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆50Updated 11 months ago
- Multi-Channel Deep Chemogenomic Modeling of Receptor-Ligand Binding Affinity Prediction for Drug Discovery☆27Updated 3 years ago
- DeepTTC: a transformer-based model for predicting cancer drug response☆15Updated last year
- ☆17Updated 7 months ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated last year
- A repository for neural representational learning of RNA secondary structures☆32Updated 5 years ago
- DeePhase predictor of homotypic liquid-liquid phase separation of proteins & the code associated with the paper "Learning the molecular g…☆16Updated 3 years ago
- Amino Acid Embedding Representation as Machine Learning Features☆20Updated 6 years ago
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆26Updated 2 years ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆59Updated 8 months ago
- Paratope Prediction using Deep Learning☆59Updated last year
- L1000 peak deconvolution based on Bayesian analysis☆25Updated 3 years ago
- A Deep Learning based Efficacy Prediction System for drug discovery☆66Updated 2 years ago
- This repository provides an implementation of the DTiGEMSplus tool, a network-based method for computational Drug-Target Interaction pred…☆27Updated 3 years ago
- Machine learning models for antibody sequences in PyTorch☆39Updated 3 years ago
- DeepAAI☆31Updated 3 months ago
- ☆39Updated 3 weeks ago
- Deep Generative Models for Drug Combination (Graph Set) Generation given Hierarchical Disease Network Embedding☆30Updated 2 years ago
- PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)☆20Updated last year
- iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…☆32Updated last year
- Neural networks for deep mutational scanning data☆68Updated 5 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Python library for calculting synergy of drug combinations using several drug synergy frameworks☆35Updated 6 months ago
- TransDTI: Transformer-based language models for estimating DTIs and building a drug-recommendation workflow☆11Updated 2 years ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆23Updated 2 months ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆97Updated 7 months ago
- PaccMann models for protein language modeling☆42Updated 3 years ago
- ☆35Updated 2 years ago
- TEIM: TCR-Epitope Interaction Modeling☆47Updated last year