Alternatives and similar repositories for structuremap_analysis

Users that are interested in structuremap_analysis are comparing it to the libraries listed below

• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated last year
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆75Updated 2 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆60Updated 4 years ago
• schumacherlab / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆28Updated 9 months ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆57Updated 6 years ago
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆21Updated 6 years ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆72Updated 8 years ago
• pnnl / PTMPSI
  ☆17Updated 3 months ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆39Updated last year
• normandavey / AlphaFold2-IDR-complex-prediction
  ☆40Updated 4 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• mgalardini / pdb2uniprot
  Convert PDB residues to their Uniprot equivalents
  ☆17Updated 5 years ago
• DennisGankin / species-aware-DNA-LM
  Species-aware DNA language modeling
  ☆18Updated 3 years ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated 4 months ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆88Updated last year
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆71Updated last year
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆19Updated 6 years ago
• ewbell94 / PEPPI
  Pipeline for protein-protein interaction prediction
  ☆27Updated 3 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆95Updated last month
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆44Updated 3 weeks ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆63Updated 10 months ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆57Updated 3 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆52Updated last year
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated 2 years ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆50Updated last year
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆37Updated 4 years ago
• walterlab-HMS / SPOC
  Code repository for the SPOC tool for scoring binary AF-M predicitons.
  ☆15Updated 9 months ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆59Updated last year
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆57Updated last year
• PDB-REDO / AlphaBridge
  ☆50Updated last month