MannLabs / structuremap_analysisLinks
Analysis workflow for investigating the structural context of PTMs
☆11Updated last year
Alternatives and similar repositories for structuremap_analysis
Users that are interested in structuremap_analysis are comparing it to the libraries listed below
Sorting:
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆74Updated 2 years ago
- Python package for investigating the structural context of PTMs☆28Updated 10 months ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆53Updated 6 years ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Evolutionary velocity with protein language models☆94Updated this week
- HLA-I ligand predictor☆43Updated 2 months ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Updated 7 months ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- ☆39Updated 4 years ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆42Updated last year
- R package for functionally scoring phosphorylation sites☆21Updated 6 years ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆39Updated last year
- Convert PDB residues to their Uniprot equivalents☆17Updated 5 years ago
- Python package and command line tool for epitope prediction☆52Updated last year
- Code repository for the SPOC tool for scoring binary AF-M predicitons.☆14Updated 7 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆83Updated last year
- ☆82Updated 2 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆42Updated last year
- Species-aware DNA language modeling☆18Updated 2 years ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆49Updated 2 weeks ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago
- ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequence☆14Updated 5 years ago
- Comprehensive Python client for the Uniprot REST API☆52Updated 2 months ago
- PSIPRED Protein Secondary Structure Predictor☆58Updated 5 months ago
- A Python package for mapping sequence aligned data onto protein structures☆36Updated 4 years ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago