MannLabs / structuremap_analysis
Analysis workflow for investigating the structural context of PTMs
☆11Updated 10 months ago
Related projects ⓘ
Alternatives and complementary repositories for structuremap_analysis
- python tools for TCR:peptide-MHC modeling and analysis☆66Updated 7 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆56Updated 3 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆78Updated 8 months ago
- Python package for investigating the structural context of PTMs☆28Updated 10 months ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆63Updated last year
- Comprehensive Python client for the Uniprot REST API☆44Updated 3 months ago
- ☆22Updated 3 years ago
- Predict the structure of immune receptor proteins☆47Updated 2 weeks ago
- Neural networks for deep mutational scanning data☆66Updated last week
- Large language modeling applied to T-cell receptor (TCR) sequences.☆47Updated 2 years ago
- ☆9Updated 8 months ago
- ☆35Updated last month
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆29Updated last year
- Evolutionary velocity with protein language models☆83Updated last year
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆20Updated 4 months ago
- Machine learning models for antibody sequences in PyTorch☆38Updated 3 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆51Updated this week
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆12Updated last year
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆87Updated 2 months ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆30Updated last month
- A visualization software for antibody multi sequence alignment☆15Updated 5 months ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆34Updated 9 months ago
- Analysis and figure code from Alley et al. 2019.☆58Updated last year
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆33Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆61Updated 7 years ago
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆15Updated 5 years ago
- ☆22Updated 10 months ago
- ☆29Updated 11 months ago
- Tool for rapid clustering of antibody models by the structure of their CDRs.☆19Updated 3 weeks ago
- ☆19Updated 5 months ago