Alternatives and similar repositories for Amino-Acid-Embedding

Users that are interested in Amino-Acid-Embedding are comparing it to the libraries listed below

• matsengrp / vampire
  🧛 Deep generative models for TCR sequences 🧛
  ☆17Updated 3 years ago
• IdoSpringer / ERGO
  ERGO is a deep learing based model for predicting TCR-peptide binding.
  ☆17Updated 2 years ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆48Updated 5 years ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• JaesikKim / HiG2Vec
  ☆23Updated 2 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• HYsxe / ACME
  Supplementary data for the ACME algorithm
  ☆23Updated 2 years ago
• kundajelab / DeepExplain
  A unified framework of perturbation and gradient-based attribution methods for Deep Neural Networks interpretability
  ☆8Updated 5 years ago
• churchlab / UniRep-analysis
  Analysis and figure code from Alley et al. 2019.
  ☆59Updated 2 years ago
• p-koo / learning_sequence_motifs
  "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy
  ☆33Updated 5 years ago
• xypan1232 / iDeep
  iDeep: integrated prediction of RNA-protein binding sites using deep learning
  ☆39Updated 4 years ago
• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆45Updated 6 years ago
• largelymfs / deepcontact
  DeepContact Software
  ☆26Updated 7 years ago
• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆72Updated 4 years ago
• Rostlab / goPredSim
  ☆47Updated 6 months ago
• gifford-lab / DeepLigand
  ☆17Updated 3 years ago
• varnivey / ipanda
  insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…
  ☆25Updated 8 years ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆66Updated 7 years ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆48Updated 10 months ago
• SBRG / Protein_ML
  Machine learning workflows for analyzing high-throughput protein data
  ☆26Updated 8 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆93Updated last year
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 5 years ago
• lasersonlab / pepsyn
  Peptide library design
  ☆23Updated 4 years ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆28Updated last year
• ehsanasgari / Deep-Proteomics
  ☆51Updated 4 years ago
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆57Updated 7 months ago
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆32Updated 6 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• ikmb / amino_acid_encoding_deep_learning_applications
  The repository contains all the code for the paper amino acid encoding using deep learning application
  ☆21Updated 11 months ago
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 3 years ago