nh2tran / DeepNovo

Related projects ⓘ

Alternatives and complementary repositories for DeepNovo

• Bjoux2 / DeepLearning-in-Bioinformatics
  For anyone who are eager to applying deep learning in bioinformatics!
  ☆120Updated 6 years ago
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆106Updated 4 months ago
• Roestlab / PythonProteomics
  A collection of available Python tools for Proteomics analysis
  ☆46Updated 5 years ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆67Updated 2 years ago
• bzhanglab / deep_learning_in_proteomics
  A list of tools on proteomics using deep learning
  ☆88Updated 6 months ago
• Nesvilab / FragPipe
  A cross-platform proteomics data analysis suite
  ☆202Updated last week
• MSGFPlus / msgfplus
  MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …
  ☆77Updated 7 months ago
• Nesvilab / philosopher
  PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering
  ☆111Updated last month
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆89Updated last month
• lkytal / PepNet
  The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra
  ☆30Updated last week
• verilylifesciences / deepmass
  DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.
  ☆46Updated 2 years ago
• compomics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆55Updated 2 weeks ago
• nh2tran / DeepNovo-DIA
  De novo peptide sequencing for DDA and DIA by deep learning
  ☆30Updated 3 years ago
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆78Updated 3 weeks ago
• lmsac / DeepDIA
  Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.
  ☆41Updated 2 years ago
• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆44Updated 5 months ago
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆76Updated this week
• jessegmeyerlab / proteomics-tutorial
  ☆53Updated 6 months ago
• kusterlab / prosit
  Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…
  ☆85Updated last year
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆146Updated last week
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆32Updated 8 months ago
• RASpicer / MetabolomicsTools
  ☆55Updated 3 years ago
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆42Updated this week
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆111Updated this week
• msproteomicstools / msproteomicstools
  Some hopefully useful tools for mass spectrometry applied to proteomics
  ☆52Updated 3 years ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆45Updated this week
• mobiusklein / glypy
  Glycan Analysis and Glycoinformatics Library for Python
  ☆31Updated 2 months ago
• compomics / moFF
  A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
  ☆33Updated 3 years ago
• vanessajurtz / lasagne4bio
  ☆107Updated 6 years ago
• pwilmart / TMT_analysis_examples
  Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.
  ☆21Updated 2 years ago