nh2tran / DeepNovoLinks
Protein Identification with Deep Learning
☆97Updated 4 years ago
Alternatives and similar repositories for DeepNovo
Users that are interested in DeepNovo are comparing it to the libraries listed below
Sorting:
- A collection of available Python tools for Proteomics analysis☆56Updated 6 years ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆86Updated last year
- A list of tools on proteomics using deep learning☆96Updated last year
- De novo peptide sequencing for DDA and DIA by deep learning☆34Updated 4 years ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆79Updated last year
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Updated 4 years ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆87Updated last month
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆128Updated 3 weeks ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆40Updated last year
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆64Updated last month
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆119Updated last month
- ☆55Updated 4 years ago
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆42Updated 2 years ago
- Some hopefully useful tools for mass spectrometry applied to proteomics☆53Updated 3 years ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆49Updated last week
- For anyone who are eager to applying deep learning in bioinformatics!☆123Updated 6 years ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆116Updated 2 weeks ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆82Updated 2 months ago
- ☆62Updated last year
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆50Updated 3 years ago
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆35Updated 7 months ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- ☆25Updated 2 years ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆43Updated 2 months ago
- Community-curated tutorials and datasets for ML in proteomics☆54Updated 2 months ago
- A cross-platform proteomics data analysis suite☆234Updated last week
- MusiteDeep provides a deep-learning method for general and kinase-specific phosphorylation site prediction. It is implemented by deep lea…☆48Updated 10 months ago
- Glycan Analysis and Glycoinformatics Library for Python☆35Updated 2 weeks ago
- Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.☆44Updated 2 years ago
- Rescoring and spectral library generation pipeline for proteomics.☆43Updated last week