nh2tran / DeepNovoLinks
Protein Identification with Deep Learning
☆102Updated 5 years ago
Alternatives and similar repositories for DeepNovo
Users that are interested in DeepNovo are comparing it to the libraries listed below
Sorting:
- A collection of available Python tools for Proteomics analysis☆66Updated 6 years ago
- For anyone who are eager to applying deep learning in bioinformatics!☆124Updated 7 years ago
- A list of tools on proteomics using deep learning☆106Updated last year
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆51Updated 4 years ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Updated 2 years ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆82Updated 2 months ago
- Python interface to running command-line and web-based MHC binding predictors☆99Updated last year
- Peptide-MHC I binding affinity prediction☆226Updated 7 months ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆124Updated 2 weeks ago
- De novo peptide sequencing for DDA and DIA by deep learning☆39Updated 5 years ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Updated 4 years ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆72Updated last month
- Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools☆136Updated 3 years ago
- ☆55Updated 4 years ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆91Updated last month
- WebLogo 3: Sequence Logos redrawn☆153Updated last week
- ☆59Updated 8 years ago
- MusiteDeep provides a deep-learning method for general and kinase-specific phosphorylation site prediction. It is implemented by deep lea…☆48Updated 5 months ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆122Updated last month
- ☆59Updated 4 years ago
- Deep learning framework for proteomics☆141Updated 3 weeks ago
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆39Updated last year
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆79Updated last month
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆74Updated 2 years ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆96Updated last year
- Some hopefully useful tools for mass spectrometry applied to proteomics☆53Updated 4 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆31Updated 3 years ago
- Training and testing of DeepBind models.☆101Updated 10 years ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated 2 weeks ago
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆31Updated last year