nh2tran / DeepNovoLinks
Protein Identification with Deep Learning
☆98Updated 4 years ago
Alternatives and similar repositories for DeepNovo
Users that are interested in DeepNovo are comparing it to the libraries listed below
Sorting:
- A collection of available Python tools for Proteomics analysis☆56Updated 6 years ago
- De novo peptide sequencing for DDA and DIA by deep learning☆34Updated 4 years ago
- A list of tools on proteomics using deep learning☆97Updated last year
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆119Updated last month
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆82Updated 3 months ago
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆50Updated 3 years ago
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆42Updated 2 years ago
- Some hopefully useful tools for mass spectrometry applied to proteomics☆52Updated 3 years ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆86Updated last year
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆79Updated last year
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Updated 4 years ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆87Updated 2 months ago
- ☆24Updated 2 years ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆65Updated 3 weeks ago
- For anyone who are eager to applying deep learning in bioinformatics!☆123Updated 6 years ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆64Updated 2 years ago
- PDV: an integrative proteomics data viewer☆48Updated 2 months ago
- ☆13Updated last year
- A cross-platform proteomics data analysis suite☆237Updated this week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆69Updated this week
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆51Updated 2 weeks ago
- Deep learning framework for proteomics☆127Updated 3 weeks ago
- ☆62Updated last year
- This is a collection of minimal code to visualize various aspects of proteomics data.☆79Updated 3 years ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆117Updated this week
- PyProphet: Semi-supervised learning and scoring of OpenSWATH results.☆28Updated last week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆44Updated 3 months ago
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆35Updated 7 months ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆40Updated last year
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆212Updated last week