nh2tran / DeepNovoLinks
Protein Identification with Deep Learning
☆99Updated 4 years ago
Alternatives and similar repositories for DeepNovo
Users that are interested in DeepNovo are comparing it to the libraries listed below
Sorting:
- A collection of available Python tools for Proteomics analysis☆60Updated 6 years ago
- For anyone who are eager to applying deep learning in bioinformatics!☆124Updated 6 years ago
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆51Updated 3 years ago
- A list of tools on proteomics using deep learning☆105Updated last year
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆89Updated 2 years ago
- Peptide-MHC I binding affinity prediction☆215Updated 4 months ago
- De novo peptide sequencing for DDA and DIA by deep learning☆36Updated 4 years ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Updated 4 years ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated 2 months ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆81Updated last year
- Python interface to running command-line and web-based MHC binding predictors☆98Updated 11 months ago
- Deep learning framework for proteomics☆132Updated 3 weeks ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆118Updated this week
- ☆59Updated 8 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Updated 8 years ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated last month
- Some hopefully useful tools for mass spectrometry applied to proteomics☆53Updated 3 years ago
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆43Updated 2 years ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated this week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆45Updated 6 months ago
- ☆24Updated 2 years ago
- WebLogo 3: Sequence Logos redrawn☆152Updated 4 months ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆90Updated last year
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆39Updated 10 months ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆72Updated 2 years ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆73Updated 3 weeks ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 7 months ago
- A visible neural network model for drug response prediction☆149Updated 2 years ago
- ☆55Updated 4 years ago
- MusiteDeep provides a deep-learning method for general and kinase-specific phosphorylation site prediction. It is implemented by deep lea…☆48Updated last month