โ10Dec 8, 2023Updated 2 years ago
Alternatives and similar repositories for genomics_scripts
Users that are interested in genomics_scripts are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ๐ชClassification through yAML Heuristic Mapping Protocol ๐ชโ10Updated this week
- pathogen agnostic general workflow for genome assembly of Illumina paired-end sequence dataโ13Jan 6, 2026Updated 10 months ago
- Experiments with using BIGSI data structure for metagenomic and QC applicationsโ19Aug 12, 2024Updated 2 years ago
- โ16Apr 29, 2024Updated 2 years ago
- Colinear block visualisation toolโ32Jan 17, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer โข AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fasten toolkit, for streaming operations on fastq filesโ85Oct 12, 2026Updated 3 weeks ago
- a python package for automated generation of phylogenetic trees from genbank filesโ24Apr 9, 2026Updated 6 months ago
- Phage prediction toolsโ15Aug 1, 2023Updated 3 years ago
- file command's magic pattern file for bioinformaticsโ21Nov 25, 2015Updated 10 years ago
- Qudian themes for VS Code/Cursor and macOS Terminal. Live and drink.โ14Oct 1, 2026Updated last month
- Code Safety Inspection Serviceโ20Sep 23, 2022Updated 4 years ago
- A tool for managing your poresโ10Jul 22, 2026Updated 3 months ago
- Templates for use in preparing articles for the Living Journal of Computational Molecular Sciences (LiveCoMS)โ11Jul 20, 2026Updated 3 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.โ38Jul 21, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits โข AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.โ29May 7, 2026Updated 5 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomesโ97May 3, 2025Updated last year
- GTDB taxonomy taxdump files with trackable TaxIdsโ65Apr 18, 2026Updated 6 months ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).โ28May 7, 2026Updated 5 months ago
- โ13Sep 11, 2025Updated last year
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigationsโ26Aug 26, 2024Updated 2 years ago
- Sketch-based surveillance platformโ13Oct 29, 2026Updated last week
- A command line tool for quickly visualizing phylogenetic tree via a single command in terminal.โ10Apr 9, 2019Updated 7 years ago
- Introduction to bioinformatics command line tools on the cloud, developed by Dartmouth Collegeโ11Jun 6, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer โข AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio readsโ66Jan 22, 2026Updated 9 months ago
- Recombination-free treesโ76Jul 24, 2026Updated 3 months ago
- SeqSero2โ41Oct 1, 2025Updated last year
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxaโ26May 30, 2023Updated 3 years ago
- โ39Oct 31, 2026Updated last week
- Assemble bacterial isolate genomes from Nanopore readsโ136Jan 22, 2025Updated last year
- Repository of computational biochemistry protocols for the Amber packageโ12Oct 4, 2024Updated 2 years ago
- Tool intended to pull out sequences and annotations between insertion sites specified by the user.โ15Apr 10, 2026Updated 6 months ago
- Variant Agents: Multi-Agent Genomic Analysisโ23Feb 13, 2026Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer โข AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Wrapper script for easier read scrubbing with DASCRUBBERโ10Feb 22, 2019Updated 7 years ago
- Get microbial sequence data easier and fasterโ29Nov 7, 2019Updated 6 years ago
- โ10Jun 9, 2025Updated last year
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genesโ10Sep 2, 2021Updated 5 years ago
- Want to make a neighbourhood-scale synteny plot? Have too many genomic neighbourhoods? SyntenyQC may help!โ13May 17, 2026Updated 5 months ago
- Reproducible hybrid metagenomics with MAG recovery and strain-level resolutionโ11Aug 20, 2026Updated 2 months ago
- ๐งฎ ๐ข Generate multi-sample k-mer count matrix from WGSโ11Jan 17, 2026Updated 9 months ago