ucscGenomeBrowser / kentLinks
UCSC Genome Browser source tree. Stable branch: "beta".
☆236Updated this week
Alternatives and similar repositories for kent
Users that are interested in kent are comparing it to the libraries listed below
Sorting:
- Plot structural variant signals from many BAMs and CRAMs☆543Updated 10 months ago
- Bayesian haplotype-based mutation calling☆311Updated 2 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆224Updated 3 weeks ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆270Updated 4 months ago
- Annotation and Ranking of Structural Variation☆258Updated 3 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆254Updated last year
- Fast and accurate gene fusion detection from RNA-Seq data☆241Updated 2 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆416Updated 5 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆223Updated 3 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆226Updated this week
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆241Updated 2 years ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆167Updated this week
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆268Updated 2 weeks ago
- Quick mining and visualization of NGS data by integrating genomic databases☆265Updated 2 years ago
- parallel fastq-dump wrapper☆295Updated 2 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆318Updated last week
- Documentation for the ANNOVAR software☆242Updated 2 months ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆366Updated last week
- Toolset for SV simulation, comparison and filtering☆379Updated last year
- GFF and GTF file manipulation and interconversion☆299Updated last year
- An accurate GFF3/GTF lift over pipeline☆482Updated last year
- ☆277Updated 3 months ago
- An overview of all nanopack tools☆254Updated 2 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆377Updated last year
- Precision HLA typing from next-generation sequencing data☆199Updated last year
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆252Updated 4 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆214Updated last month
- Nanopore demultiplexing, QC and alignment pipeline☆201Updated last week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆160Updated 2 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆260Updated 3 weeks ago