eugenebang / DREAMwalkLinks
The official code implementation for DREAMwalk in Python.
☆30Updated 2 years ago
Alternatives and similar repositories for DREAMwalk
Users that are interested in DREAMwalk are comparing it to the libraries listed below
Sorting:
- This repository provides an implementation of the DTiGEMSplus tool, a network-based method for computational Drug-Target Interaction pred…☆27Updated 4 years ago
- Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network …☆32Updated 2 years ago
- ☆18Updated 4 years ago
- Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19☆28Updated 4 years ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆52Updated 4 years ago
- ☆19Updated last year
- PyTorch implementation of "TGSA: Protein-Protein Association-Based Twin Graph Neural Networks for Drug Response Prediction with Similarit…☆23Updated 4 years ago
- Deep Generative Models for Drug Combination (Graph Set) Generation given Hierarchical Disease Network Embedding☆31Updated 2 years ago
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆35Updated 4 years ago
- ☆10Updated 5 years ago
- [NBME] Interpretable identification of cancer genes across biological networks via transformer-powered graph representation learning☆23Updated 5 months ago
- GraphCDR: A graph neural network method with contrastive learning for cancer drug response prediction☆31Updated 4 years ago
- ☆57Updated 6 years ago
- ☆35Updated last year
- ☆32Updated 7 years ago
- ☆92Updated 2 years ago
- ☆73Updated 2 years ago
- Algorithms for prediction of drug-target interactions via computational (chemogenomic) methods☆48Updated 6 years ago
- Interpretable bilinear attention network with domain adaptation improves drug-target prediction.☆140Updated 2 years ago
- ☆29Updated 5 years ago
- ☆46Updated last year
- Network-based project to explore gene connectivity through biological scales☆23Updated last year
- SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks (Scientific Reports)☆65Updated 5 years ago
- ☆58Updated last year
- ☆58Updated 5 years ago
- Materials for KDD2023 tutorial: Knowledge-augmented Graph Machine Learning for Drug Discovery: from Precision to Interpretability☆23Updated 2 years ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆54Updated 6 months ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆61Updated last year
- [IJMS 2022] DRPreter: Interpretable Anticancer Drug Response Prediction Using Knowledge-Guided Graph Neural Networks and Transformer☆13Updated 3 years ago
- DeepTTC: a transformer-based model for predicting cancer drug response☆19Updated 2 years ago