eugenebang / DREAMwalk
The official code implementation for DREAMwalk in Python.
☆16Updated last year
Alternatives and similar repositories for DREAMwalk:
Users that are interested in DREAMwalk are comparing it to the libraries listed below
- ☆15Updated 5 months ago
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆26Updated 2 years ago
- This repository provides an implementation of the DTiGEMSplus tool, a network-based method for computational Drug-Target Interaction pred…☆27Updated 3 years ago
- iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…☆29Updated last year
- Multi-Channel Deep Chemogenomic Modeling of Receptor-Ligand Binding Affinity Prediction for Drug Discovery☆27Updated 3 years ago
- PyTorch implementation of "TGSA: Protein-Protein Association-Based Twin Graph Neural Networks for Drug Response Prediction with Similarit…☆24Updated 3 years ago
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆26Updated last month
- Accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model☆16Updated 6 months ago
- ☆16Updated 11 months ago
- DeePhase predictor of homotypic liquid-liquid phase separation of proteins & the code associated with the paper "Learning the molecular g…☆16Updated 3 years ago
- [IJMS 2022] DRPreter: Interpretable Anticancer Drug Response Prediction Using Knowledge-Guided Graph Neural Networks and Transformer☆9Updated 2 years ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆49Updated 3 years ago
- DeepTTC: a transformer-based model for predicting cancer drug response☆15Updated last year
- Graph-based representation learning method for protein function prediction☆24Updated 4 years ago
- ☆16Updated 3 years ago
- ☆26Updated last month
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 2 months ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated 6 months ago
- SGPPI: structure-aware prediction of protein-protein interactions in rigorous conditions with graph convolutional network☆15Updated 2 years ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆29Updated last year
- ☆33Updated last month
- Network-based project to explore gene connectivity through biological scales☆23Updated 4 months ago
- AGILE Platform: A Deep Learning-Powered Approach to Accelerate LNP Development for mRNA Delivery☆33Updated this week
- ☆46Updated 5 months ago
- ☆35Updated 5 months ago
- The Supplementary data in the paper "A Survey and Systematic Assessment of Computational Methods for Drug Response Prediction"☆11Updated 5 years ago
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆34Updated 3 years ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆60Updated last year
- ☆31Updated 2 years ago