lcbb / PERDIXLinks
Designer scaffolded DNA DX-based wireframe lattices
☆14Updated 7 years ago
Alternatives and similar repositories for PERDIX
Users that are interested in PERDIX are comparing it to the libraries listed below
Sorting:
- Protein Structure Analysis☆55Updated 2 months ago
- The DSSP building software☆47Updated 2 years ago
- ☆39Updated last year
- AlphaFold-initiated replica exchange protein docking☆84Updated 3 months ago
- A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA☆20Updated 3 years ago
- GREMLIN is a method to learn a statistical model of a protein family that captures both conservation and co-evolution patterns in the fam…☆21Updated 9 years ago
- Structure prediction of alternative protein conformations☆77Updated 6 months ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆53Updated 4 months ago
- Protein folding in Pymol☆109Updated 7 months ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆21Updated 2 years ago
- RosettaDesign using PyRosetta☆32Updated 6 years ago
- Software for biomolecular electrostatics and solvation calculations☆107Updated 11 months ago
- This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the Universit…☆83Updated 5 months ago
- ☆16Updated 4 months ago
- Improved antibody structure-based design using inverse folding☆132Updated 2 weeks ago
- Python interface for the RCSB PDB search API.☆64Updated 5 months ago
- pyFoldX: python bindings for FoldX.☆48Updated 4 years ago
- A simple Python library to generate model peptides☆87Updated 4 years ago
- Slides + Iframe = sliFrame☆55Updated 4 months ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆96Updated 2 years ago
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆117Updated 2 years ago
- Modelling of Large Protein Complexes☆37Updated 3 weeks ago
- Generative method to design novel proteins using a diffusion model☆43Updated 2 years ago
- code for IDR binding paper 2025☆48Updated 6 months ago
- An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM☆36Updated 3 months ago
- ☆85Updated last year
- P2PXML: Deep Geometric Framework to Predict Antibody-Antigen Binding Affinity☆10Updated 9 months ago
- ☆48Updated 2 years ago
- Protein design and variant prediction using autoregressive generative models☆110Updated last year