Alternatives and similar repositories for PERDIX

Users that are interested in PERDIX are comparing it to the libraries listed below

• lehner-lab / doubledeepms
  Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…
  ☆21Updated 2 years ago
• rwmontalvao / Melodia_py
  Protein Structure Analysis
  ☆63Updated 3 months ago
• sulcgroup / oxdna_analysis_tools
  A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA
  ☆20Updated 3 years ago
• rcsb / py-rcsbsearchapi
  Python interface for the RCSB PDB search API.
  ☆65Updated 9 months ago
• Electrostatics / apbs
  Software for biomolecular electrostatics and solvation calculations
  ☆120Updated last year
• carlocamilloni / Structural-Bioinformatics
  This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the Universit…
  ☆88Updated 2 weeks ago
• cmbi / dssp
  The DSSP building software
  ☆48Updated 2 years ago
• log-md / sliFrame
  Slides + Iframe = sliFrame
  ☆55Updated 8 months ago
• lorenzo-rovigatti / tacoxDNA
  A collection of tools for DNA modelling
  ☆22Updated 4 months ago
• lcbc-epfl / metal-site-prediction
  ☆41Updated last year
• KULL-Centre / papers
  Material from papers from KULL centre
  ☆71Updated last year
• valence-labs / mtl_summer_school_2024
  ☆47Updated last year
• maxhebditch / abpred
  ☆22Updated 6 years ago
• lamm-mit / ProteinDiffusionGenerator
  Generative method to design novel proteins using a diffusion model
  ☆43Updated 2 years ago
• srnas / barnaba
  Analyse Nucleic Acids Structure and Simulations with baRNAba
  ☆47Updated last year
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆80Updated 10 months ago
• idlutz / protein-backbone-MCTS
  ☆52Updated last year
• sokrypton / GREMLIN
  GREMLIN is a method to learn a statistical model of a protein family that captures both conservation and co-evolution patterns in the fam…
  ☆23Updated 9 years ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆127Updated last month
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆60Updated 3 months ago
• sarisabban / RosettaDesign
  RosettaDesign using PyRosetta
  ☆33Updated 6 years ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆86Updated 6 months ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆87Updated last year
• KULL-Centre / _2024_Cao_CALVADOSCOM
  ☆19Updated 8 months ago
• tubiana / protocolGromacs
  Automatic gromacs protocol from preparation to production with ligand parametrization through
  ☆77Updated 8 months ago
• dahjan / DMS_opt
  ☆73Updated 5 years ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆127Updated 2 years ago
• dina-lab3D / NanoNet
  ☆51Updated 2 years ago
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…
  ☆63Updated 2 months ago
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆98Updated 2 years ago