Alternatives and similar repositories for PERDIX

Users that are interested in PERDIX are comparing it to the libraries listed below

• sulcgroup / oxdna_analysis_tools
  A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA
  ☆20Updated 2 years ago
• lehner-lab / doubledeepms
  Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…
  ☆19Updated last year
• Drug-Discovery-ENTC / p2pxml
  P2PXML: Deep Geometric Framework to Predict Antibody-Antigen Binding Affinity
  ☆10Updated 6 months ago
• mirabdi / PDAnalysis
  ☆32Updated last year
• jaaamessszzz / BindingSitesFromFragments
  De novo design of small molecule binding sites into proteins
  ☆12Updated 4 years ago
• lorenzo-rovigatti / tacoxDNA
  A collection of tools for DNA modelling
  ☆20Updated last year
• npschafer / openawsem
  An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM
  ☆36Updated last month
• KULL-Centre / _2024_Cao_CALVADOSCOM
  ☆16Updated 2 months ago
• leandroradusky / pyfoldx
  pyFoldX: python bindings for FoldX.
  ☆46Updated 3 years ago
• pstansfeld / MemProtMD
  ☆42Updated last month
• srnas / barnaba
  Analyse Nucleic Acids Structure and Simulations with baRNAba
  ☆44Updated last year
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆31Updated 2 weeks ago
• LPDI-EPFL / FunFolDesData
  Rosetta FunFolDes – a general framework for the computational design of functional proteins.
  ☆19Updated 6 years ago
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆30Updated 11 months ago
• coreyhowe999 / RSO
  ☆21Updated 8 months ago
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆26Updated last month
• lcbc-epfl / metal-site-prediction
  ☆39Updated last year
• JoaoRodrigues / interfacea
  An open-source library for the analysis of protein interactions.
  ☆29Updated 3 years ago
• ginkgobioworks / ginkgoai-protein-embedding-tutorial
  Tutorial on how to use Ginkgo AI embedding APIs for scientific problems
  ☆19Updated 7 months ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆37Updated 2 months ago
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆31Updated 7 months ago
• sarisabban / RosettaDesign
  RosettaDesign using PyRosetta
  ☆31Updated 5 years ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆57Updated 6 months ago
• guyuehuo / opendock
  ☆48Updated 6 months ago
• cabb99 / open3spn2
  An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM
  ☆18Updated last month
• Rocklin-Lab / cdna-display-proteolysis-pipeline
  ☆25Updated 2 years ago
• idptools / finches
  FINCHES (First-principle Interactions via CHEmical Specificity) - Python package for predicting chemically-specific molecular interaction…
  ☆26Updated 2 weeks ago
• bwicky / oligomer_hallucination
  ☆35Updated last year
• KULL-Centre / CALVADOS
  ☆66Updated last week
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆54Updated 7 months ago