lcbb / PERDIX
Designer scaffolded DNA DX-based wireframe lattices
☆14Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for PERDIX
- A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA☆20Updated 2 years ago
- ☆34Updated 2 months ago
- A collection of tools for DNA modelling☆17Updated 6 months ago
- ☆32Updated 3 months ago
- This is a Python implementation of the sequence design algorithm DAEDALUS for scaffolded DNA origami☆16Updated 8 months ago
- ☆10Updated 2 weeks ago
- ☆35Updated 10 months ago
- Resources for the BioML Challenge 2024: Bits to Binders☆16Updated 2 months ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆37Updated 6 months ago
- Tool for modelling the CDRs of antibodies☆32Updated 2 years ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆24Updated 7 months ago
- Structure prediction of alternative protein conformations☆71Updated 2 months ago
- This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the Universit…☆52Updated this week
- protein conformational spaces meet machine learning☆41Updated last week
- RosettaDesign using PyRosetta☆30Updated 5 years ago
- An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM☆35Updated 3 months ago
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆26Updated 3 years ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆33Updated 2 months ago
- ☆35Updated 11 months ago
- ☆38Updated 2 months ago
- AlphaFold-initiated replica exchange protein docking☆45Updated 3 months ago
- ☆31Updated last week
- Python interface for the RCSB PDB search API.☆53Updated last month
- De novo design of small molecule binding sites into proteins☆13Updated 3 years ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆30Updated 2 years ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆29Updated 3 years ago
- ☆70Updated 6 months ago
- ☆25Updated last year
- ☆23Updated 3 weeks ago
- An open-source library for the analysis of protein interactions.☆29Updated 2 years ago