dnanexus-archive / dot
Dot: An interactive dot plot viewer for comparative genomics
☆6Updated 5 years ago
Alternatives and similar repositories for dot:
Users that are interested in dot are comparing it to the libraries listed below
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Genome Annotation Without Nightmares☆43Updated 2 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- Visualize whole genome alignments as linear maps☆72Updated 6 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- Conditional Reciprocal Best Blast☆42Updated 8 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 2 years ago
- Filter SAM file for soft and hard clipped alignments☆46Updated 10 months ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 5 months ago
- Merge transcriptome assemblies☆30Updated 8 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 3 years ago
- Structural variant caller☆54Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- ☆61Updated 3 weeks ago
- UCSC Nanopore☆43Updated 5 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- ☆43Updated 8 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago