eclarke / swgaLinks
Select primer sets for selective whole genome amplification (SWGA)
☆32Updated 6 years ago
Alternatives and similar repositories for swga
Users that are interested in swga are comparing it to the libraries listed below
Sorting:
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 9 months ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 6 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆47Updated 8 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆58Updated last year
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Filter SAM file for soft and hard clipped alignments☆53Updated last year
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- Visualize whole genome alignments as linear maps☆73Updated 3 weeks ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 3 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Edinburgh Genomics MinION training 2016☆33Updated 8 years ago
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆62Updated last month
- Synteny Imager☆64Updated last month
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- GATB Minia assembly pipeline☆30Updated 2 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated 9 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆67Updated 5 years ago
- A reference viral database (RVDB)☆26Updated 6 years ago
- Toolkit for preparing genomes for submission to NCBI☆30Updated 3 years ago
- CRyPTIC data processing pipelines☆34Updated last year