Alternatives and similar repositories for RNA-Science-Toolbox

Users that are interested in RNA-Science-Toolbox are comparing it to the libraries listed below

• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆42Updated 3 years ago
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆35Updated 4 years ago
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 5 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆29Updated last year
• jurgjn / af-protein-universe
  ☆25Updated last year
• hgbrian / biocolabs
  a collection of colabs useful for molecular biology
  ☆30Updated last year
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 3 years ago
• ViennaRNA / RNAsketch
  Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.
  ☆21Updated 6 years ago
• lasersonlab / pepsyn
  Peptide library design
  ☆23Updated 4 years ago
• esbgkannan / chumby
  A package for making tree-based visualizations for embedding vectors
  ☆9Updated 2 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆51Updated 10 months ago
• mgalardini / pdb2uniprot
  Convert PDB residues to their Uniprot equivalents
  ☆17Updated 5 years ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆21Updated 2 weeks ago
• andyposbe / ColabFold-Pipeline-Toolkit
  The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.
  ☆16Updated last year
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆38Updated last year
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆42Updated 2 weeks ago
• satoken / centroid-rna-package
  Centroid RNA package
  ☆19Updated 4 years ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆38Updated 10 months ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆20Updated last year
• wangleiofficial / DSSPparser
  DSSPparser is an easy tool to parse dssp file, and can transform PDB format file to dssp format file by xssp,also support the tansfrom be…
  ☆13Updated 2 years ago
• wrf / pdbcolor
  Python code to color a PDB structure based on parameters from a multiple sequence alignment
  ☆32Updated last year
• drgoulet / Codon-optimization
  Use machine learning to design codon-optimized DNA sequences for increased protein expression.
  ☆15Updated 2 years ago
• cusbg / traveler
  Template-based RNA secondary structure visualization
  ☆26Updated 6 months ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆38Updated 8 months ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆68Updated 2 years ago
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆72Updated last month
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆65Updated 7 years ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆56Updated 5 months ago