fjossinet / RNA-Science-Toolbox
A platform to do RNA science
☆27Updated 4 years ago
Alternatives and similar repositories for RNA-Science-Toolbox:
Users that are interested in RNA-Science-Toolbox are comparing it to the libraries listed below
- Evolutionary conservation estimation of residues or nucleotides☆41Updated 3 years ago
- a collection of colabs useful for molecular biology☆30Updated last year
- Peptide library design☆23Updated 4 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆29Updated last year
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 3 years ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 5 years ago
- Centroid RNA package☆19Updated 4 years ago
- Convert PDB residues to their Uniprot equivalents☆17Updated 5 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆42Updated 2 weeks ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆24Updated 2 months ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 2 years ago
- Python package and command line tool for epitope prediction☆51Updated 8 months ago
- Code for LazyAF pipeline☆20Updated last year
- Cross-protein transfer learning for variant effect prediction☆20Updated last year
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated last year
- ☆22Updated last year
- ☆23Updated last year
- MOLeculAR structure annoTator☆34Updated 6 months ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆27Updated 2 years ago
- an accurate approach for predicting protein-protein affinity changes upon interfacial amino-acid mutations by combining physics and evolu…☆13Updated last year
- Python framework for doing ancestral sequence reconstruction☆38Updated 9 months ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆44Updated 5 years ago
- ☆28Updated 11 months ago
- Fast protein domain structure embedding+search tool☆16Updated 3 weeks ago
- Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.☆20Updated 6 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆38Updated 3 weeks ago
- scripts and facilities for in-silico mutagenesis with FoldX☆56Updated 4 months ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- DSSPparser is an easy tool to parse dssp file, and can transform PDB format file to dssp format file by xssp,also support the tansfrom be…☆13Updated 2 years ago