andrewguy / biostructmap
A Python package for mapping sequence aligned data onto protein structures
☆34Updated 3 years ago
Alternatives and similar repositories for biostructmap:
Users that are interested in biostructmap are comparing it to the libraries listed below
- Evolutionary conservation estimation of residues or nucleotides☆34Updated 2 years ago
- Python package and command line tool for epitope prediction☆51Updated 6 months ago
- A platform to do RNA science☆27Updated 3 years ago
- Python framework for doing ancestral sequence reconstruction☆37Updated 7 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆81Updated 10 months ago
- Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.☆20Updated 6 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆27Updated last year
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆32Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆52Updated 2 months ago
- A package for making tree-based visualizations for embedding vectors☆9Updated 2 years ago
- ☆31Updated 4 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆56Updated 2 months ago
- a collection of colabs useful for molecular biology☆30Updated 11 months ago
- Comprehensive Python client for the Uniprot REST API☆45Updated 6 months ago
- Code for LazyAF pipeline☆21Updated last year
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated last year
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆82Updated 5 months ago
- Singularity recipe for AlphaFold☆34Updated 3 months ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 5 years ago
- PSIPRED Protein Secondary Structure Predictor☆54Updated 2 months ago
- Transmembrane proteins predicted through Language Model embeddings☆33Updated 3 weeks ago
- Evolutionary velocity with protein language models☆84Updated last year
- a pipeline to build similarity maps of protein space☆31Updated 2 months ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated last year
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆68Updated this week
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆42Updated this week
- Template-based RNA secondary structure visualization☆25Updated 2 months ago
- ☆34Updated 3 months ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆42Updated this week