A Python package for mapping sequence aligned data onto protein structures
☆37May 26, 2021Updated 4 years ago
Alternatives and similar repositories for biostructmap
Users that are interested in biostructmap are comparing it to the libraries listed below
Sorting:
- a toolbox for the manipulation, modelling and analysis of molecular structures☆27Nov 27, 2025Updated 3 months ago
- Structural space exploration of AlphaFold DB☆12Oct 8, 2021Updated 4 years ago
- State-of-the-art ab initio prediction of 1D protein structure annotations☆14Feb 28, 2021Updated 4 years ago
- a protein descriptor for site prediction☆16Aug 9, 2019Updated 6 years ago
- ☆15Jun 22, 2020Updated 5 years ago
- Python package and command line tool for epitope prediction☆52Aug 2, 2024Updated last year
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Jul 25, 2024Updated last year
- This package is meant to calculate the dihedral entropy of a biomolecule. However, it can also calculate the entropy of any binnable dat…☆23Feb 2, 2024Updated 2 years ago
- Calculating paramagnetic NMR effects in proteins☆10May 20, 2022Updated 3 years ago
- EvoEF + evolutionary profile for ddG_bind prediction☆14Oct 17, 2025Updated 4 months ago
- 2D portraits of 3D protein structures☆27Sep 30, 2025Updated 4 months ago
- ☆11Jan 2, 2021Updated 5 years ago
- 🔍 Fit3D - An application for template-based detection of small structural motifs in protein structures and macromolecular structure data…☆11Oct 16, 2018Updated 7 years ago
- ☆11Apr 25, 2021Updated 4 years ago
- Genomic sequence preprocessing toolkit☆13Jan 13, 2026Updated last month
- ☆26May 9, 2022Updated 3 years ago
- Rapid generation of high-quality structure figures for publication with PyMOL-PUB☆87Oct 30, 2024Updated last year
- Bioinformatics and Cheminformatics protocols for peptide analysis☆45Dec 22, 2022Updated 3 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Apr 26, 2024Updated last year
- fragbuilder is a tool to create, setup and analyze QM calculations on peptides.☆15Oct 31, 2014Updated 11 years ago
- Protein preparation for MD, made faster and easier !☆15Dec 18, 2023Updated 2 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Mar 13, 2023Updated 2 years ago
- PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.☆83Feb 28, 2025Updated 11 months ago
- Calculation of interatomic interactions in molecular structures☆85Jan 28, 2026Updated 3 weeks ago
- ProteinFeatureAnalyzer extracts, analyzes and visualizes features from protein structures.☆14Mar 14, 2020Updated 5 years ago
- Ligand-binding site classification with deep graph neural networks.☆10Sep 24, 2023Updated 2 years ago
- A command line tool for rapid visualisation of AlphaFold2 and AlphaFold3 predictions.☆14Oct 21, 2025Updated 4 months ago
- Course Materials for EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research☆14Nov 29, 2021Updated 4 years ago
- customizable robust Independent Component Analysis (ICA)☆12Sep 16, 2024Updated last year
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆13Feb 12, 2026Updated 2 weeks ago
- molecule design for fluorescence☆12Nov 22, 2021Updated 4 years ago
- A Python API for managing genotype-phenotype map data☆12Aug 18, 2023Updated 2 years ago
- An automated workflow to create disease-specific Knowledge Graphs☆19Aug 21, 2025Updated 6 months ago
- Predicting Protein – Ligand Interaction by using Deep Learning Models☆11Nov 13, 2018Updated 7 years ago
- We present Envision, an accurate predictor of protein variant molecular effect, trained using large-scale experimental mutagenesis data. …☆19Jan 5, 2018Updated 8 years ago
- A web app to convert a PyMOL PSE file or PDB file to a easy to implement NGL.js view that can be implemented easily on any site☆12Nov 12, 2021Updated 4 years ago
- A Python platform for Structural Bioinformatics☆58Mar 18, 2025Updated 11 months ago
- Python Client Library for the G2P Portal API☆15Aug 14, 2025Updated 6 months ago
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆19Oct 27, 2025Updated 4 months ago