Alternatives and similar repositories for biostructmap

Users that are interested in biostructmap are comparing it to the libraries listed below

• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆52Updated last year
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆57Updated 3 years ago
• fjossinet / RNA-Science-Toolbox
  A platform to do RNA science
  ☆27Updated 4 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆55Updated 4 months ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 3 years ago
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆44Updated 3 weeks ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆95Updated last month
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆80Updated this week
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆63Updated 10 months ago
• wrf / pdbcolor
  Python code to color a PDB structure based on parameters from a multiple sequence alignment
  ☆33Updated last month
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆51Updated 2 months ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆66Updated last month
• normandavey / AlphaFold2-IDR-complex-prediction
  ☆40Updated 4 years ago
• ViennaRNA / RNAsketch
  Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.
  ☆21Updated 7 years ago
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆19Updated 6 years ago
• hgbrian / biocolabs
  a collection of colabs useful for molecular biology
  ☆32Updated last year
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆58Updated 7 months ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆23Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆72Updated 8 years ago
• graik / biskit
  A Python platform for Structural Bioinformatics
  ☆58Updated 10 months ago
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 3 years ago
• cusbg / MolArt
  MOLeculAR structure annoTator
  ☆33Updated last year
• drgoulet / Codon-optimization
  Use machine learning to design codon-optimized DNA sequences for increased protein expression.
  ☆15Updated 3 years ago
• dosorio / Peptides
  An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
  ☆97Updated 2 years ago
• nleroy917 / optipyzer
  Multi-Species Codon Optimization Engine
  ☆27Updated 6 months ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆27Updated 4 months ago
• ablab / npdtools
  Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…
  ☆29Updated 3 years ago
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆56Updated last year
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆33Updated 2 years ago