Official Repository of the Oyster River Protocol for Transcriptome Assembly
☆18Aug 12, 2021Updated 4 years ago
Alternatives and similar repositories for Oyster_River_Protocol
Users that are interested in Oyster_River_Protocol are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Jan 22, 2025Updated last year
- Software for clustering de novo assembled transcripts and counting overlapping reads☆77Feb 11, 2022Updated 4 years ago
- Merge transcriptome assemblies☆31Oct 6, 2016Updated 9 years ago
- Code to generate re-assemblies of the Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)☆23Apr 14, 2019Updated 7 years ago
- Understand your transcriptome assembly☆102Mar 22, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆51Mar 8, 2024Updated 2 years ago
- Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools☆11Apr 26, 2020Updated 5 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆27Nov 14, 2025Updated 5 months ago
- Site Identification from Short Read Sequences.☆24Nov 2, 2021Updated 4 years ago
- Annotate DNA sequences for Gene Ontology terms☆41Sep 11, 2025Updated 7 months ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆56May 11, 2020Updated 5 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Mar 21, 2024Updated 2 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. Please download the R package from the RaceID3…☆15Dec 7, 2018Updated 7 years ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆24Feb 12, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- lncRNA-Py is a development package for applying machine learning and deep learning to the problem of lncRNA classification, i.e. predicti…☆12Jan 24, 2025Updated last year
- ☆13Sep 14, 2022Updated 3 years ago
- Multi-sample transcriptome assembly from RNA-Seq☆25Jun 10, 2018Updated 7 years ago
- Bitarray implementation in Nim☆10Dec 14, 2020Updated 5 years ago
- kProcessor: kmers processing framework.☆10Oct 1, 2023Updated 2 years ago
- Tightly packed 1d and 2d bit arrays.☆13Nov 25, 2025Updated 4 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Mar 8, 2023Updated 3 years ago
- just annotate it, dammit!☆93Aug 22, 2023Updated 2 years ago
- ☆16Apr 25, 2019Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A collection of useful algorithms and data structures for bioinformatics☆12Jan 4, 2023Updated 3 years ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆28Oct 1, 2020Updated 5 years ago
- ☆15Mar 6, 2018Updated 8 years ago
- ☆13Feb 14, 2023Updated 3 years ago
- Human pan-genome analysis pipeline☆31Apr 30, 2020Updated 5 years ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Mar 11, 2026Updated last month
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆22Sep 1, 2021Updated 4 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Oct 29, 2020Updated 5 years ago
- Build sourmash databases for genbank.☆11May 4, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Cookiecutter for snakemake slurm profile☆15Jul 22, 2023Updated 2 years ago
- Multiplexed Shotgun Genotyping☆11Feb 15, 2022Updated 4 years ago
- my bin directory☆45Apr 7, 2026Updated last week
- A Nim library for phylogenetic trees☆11Mar 22, 2024Updated 2 years ago
- example "Nim to wasm".☆20Jan 3, 2020Updated 6 years ago
- ☆11Apr 17, 2023Updated 3 years ago
- A scalable variant calling and benchmarking framework supporting both short and long reads.☆14Sep 28, 2025Updated 6 months ago