aleimba / bac-genomics-scriptsLinks
Collection of scripts for bacterial genomics
☆47Updated 5 years ago
Alternatives and similar repositories for bac-genomics-scripts
Users that are interested in bac-genomics-scripts are comparing it to the libraries listed below
Sorting:
- IS mapping software☆56Updated 3 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆71Updated 3 months ago
- Scripts and libraries for Environmental Genomics☆38Updated 6 months ago
- DDBJ Fast Annotation and Submission Tool☆82Updated 3 months ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆42Updated 4 years ago
- A toolbox for comparative genomics.☆104Updated 4 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 4 years ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆36Updated 6 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 4 months ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆47Updated 4 months ago
- CLI tool to annotate genes with KOfam☆86Updated 2 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆74Updated last year
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 3 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆46Updated last year
- A pipeline for running AMRfinderPlus and collating results into functional classes☆80Updated last year
- ☆84Updated last year
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆49Updated 9 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆83Updated 9 years ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆50Updated last year
- Horizontal gene transfer (HGT) identification pipeline☆63Updated 2 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated last year
- Development version of Easyfig☆100Updated last year
- Sorts amplicons from Nanopore sequencing data based on similarity☆38Updated 2 months ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆107Updated last year
- Microbiome classification pipeline☆66Updated 3 months ago
- whole genome MLST analysis☆46Updated 2 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year