BorgwardtLab / maldi_PIKELinks
Code for 'Topological and kernel-based microbial phenotype prediction from MALDI-TOF mass spectra'
☆13Updated 3 years ago
Alternatives and similar repositories for maldi_PIKE
Users that are interested in maldi_PIKE are comparing it to the libraries listed below
Sorting:
- Core utilities for metabolomics.☆9Updated 3 months ago
- R codes for creating metamapp graphs and files☆8Updated 3 years ago
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆12Updated last year
- R Interface to the Metabolights REST API☆11Updated 3 months ago
- These workshops and tutorials provide use cases and examples for mass spectrometry data handling and analysis using the Spectra Bioconduc…☆21Updated last year
- R interface to Chemical Translation Service (CTS)☆16Updated last year
- Interactive software to analyze and browse mass spectrometry data☆21Updated last month
- Missing value imputation and evaluation, especially for metabolomics data sets☆18Updated 7 years ago
- This repository contains scripts related to Surendran P, Stewart I et al. Nature Medicine 2022 "Rare and common genetic causes of chemica…☆17Updated 3 years ago
- Core Utils for Mass Spectrometry Data☆17Updated 4 months ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆13Updated 3 years ago
- R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.☆15Updated last week
- data processing for MS-based metabolomics☆15Updated 8 months ago
- On-instrument and post-acquisition targeted feature extraction☆12Updated last year
- QC systems for metabolomics studies☆10Updated last week
- Notebooks in computational metabolomics☆15Updated 6 months ago
- Guide to processing raw LCMS metabolomic and lipidomic data using MS-DIAL, followed by data pre-processing and secondary annotation (of m…☆17Updated last year
- High level functionality to support and simplify metabolomics data annotation.☆16Updated 2 months ago
- GC/LC-MS data analysis for environmental science☆17Updated 2 months ago
- Supplementary material for the paper "Improved batch correction in untargeted MS-based metabolomics" by R. Wehrens, et al. Metabolomics, …☆15Updated 6 years ago
- A MALDI Mass Spectrometry Bioinformatics Platform☆30Updated 7 months ago
- This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics da…☆16Updated 4 years ago
- FELLA: an R package for Metabolomics data enrichment through diffusion☆21Updated 4 years ago
- a toolbox for metabolomic data analysis, visualization and ‘omic’ integration☆13Updated 7 years ago
- Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis☆18Updated 2 years ago
- Rocker image for metabolomics data analysis☆13Updated 2 months ago
- An R package of High-resolution Informatics Toolbox for Maldi-imaging Proteomics☆18Updated last week
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Updated 5 years ago
- Paired Mass Distance(PMD) analysis for GC/LC-MS based nontarget analysis☆10Updated 3 months ago
- The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.☆33Updated 4 years ago