BorgwardtLab / maldi_PIKELinks
Code for 'Topological and kernel-based microbial phenotype prediction from MALDI-TOF mass spectra'
☆11Updated 3 years ago
Alternatives and similar repositories for maldi_PIKE
Users that are interested in maldi_PIKE are comparing it to the libraries listed below
Sorting:
- R interface to Chemical Translation Service (CTS)☆16Updated last year
- Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis☆18Updated 2 years ago
- Missing value imputation and evaluation, especially for metabolomics data sets☆18Updated 7 years ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆14Updated 3 years ago
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Updated 5 years ago
- Single sample pathway analysis tools for omics data☆13Updated 10 months ago
- Notebooks in computational metabolomics☆15Updated 7 months ago
- R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.☆16Updated this week
- These workshops and tutorials provide use cases and examples for mass spectrometry data handling and analysis using the Spectra Bioconduc…☆21Updated last year
- R Interface to the Metabolights REST API☆11Updated last month
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆12Updated last year
- a toolbox for metabolomic data analysis, visualization and ‘omic’ integration☆13Updated 7 years ago
- PathIntegrate Python package for pathway-based multi-omics data integration☆16Updated 10 months ago
- Guide to processing raw LCMS metabolomic and lipidomic data using MS-DIAL, followed by data pre-processing and secondary annotation (of m…☆18Updated last year
- This repository contains scripts related to Surendran P, Stewart I et al. Nature Medicine 2022 "Rare and common genetic causes of chemica…☆17Updated 3 years ago
- A MALDI Mass Spectrometry Bioinformatics Platform☆30Updated 9 months ago
- R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox: An extensive set of data (pre-)processing and analysis m…☆10Updated 3 months ago
- Core Utils for Mass Spectrometry Data☆17Updated 5 months ago
- FELLA: an R package for Metabolomics data enrichment through diffusion☆21Updated 4 years ago
- An R package of High-resolution Informatics Toolbox for Maldi-imaging Proteomics☆18Updated 2 weeks ago
- On-instrument and post-acquisition targeted feature extraction☆12Updated last year
- ☆14Updated last week
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆12Updated 3 years ago
- Take command of your set enrichment analyses.☆22Updated this week
- The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.☆34Updated 4 years ago
- An R package for correcting p-values for multiple hypothesis testing in comparative quantitative omics experiments using permutation-base…☆11Updated 2 years ago
- data processing for MS-based metabolomics☆15Updated 10 months ago
- ☆16Updated 5 years ago
- Paired Mass Distance(PMD) analysis for GC/LC-MS based nontarget analysis☆10Updated 4 months ago
- GC/LC-MS data analysis for environmental science☆17Updated 4 months ago