Code for 'Topological and kernel-based microbial phenotype prediction from MALDI-TOF mass spectra'
☆11Apr 11, 2022Updated 3 years ago
Alternatives and similar repositories for maldi_PIKE
Users that are interested in maldi_PIKE are comparing it to the libraries listed below
Sorting:
- An R package of High-resolution Informatics Toolbox for Maldi-imaging Proteomics☆19Oct 2, 2025Updated 5 months ago
- Code for the paper "Antimicrobial resistance prediction in clinical isolates through machine learning on MALDI-TOF mass spectra"☆46Oct 7, 2022Updated 3 years ago
- Deep learning tools and models for MALDI-TOF mass spectra analysis☆28Jan 19, 2026Updated 2 months ago
- Reads data files acquired by MALDI-TOF MS on Bruker Daltonics machines of the *flex series☆14Oct 17, 2025Updated 5 months ago
- Software library for Maldi-Tof preprocessing and machine learning analysis.☆39May 9, 2023Updated 2 years ago
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genes☆10Sep 2, 2021Updated 4 years ago
- ☆14Jan 27, 2022Updated 4 years ago
- R for Mass Spectrometry documentation☆14Nov 19, 2025Updated 4 months ago
- Vignettes for Cardinal3 paper☆10Feb 20, 2023Updated 3 years ago
- The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.☆34Mar 23, 2021Updated 4 years ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 5 months ago
- ☆14Feb 4, 2026Updated last month
- Python wrapper for SIMION ion simulation software☆15Jun 26, 2025Updated 8 months ago
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12May 16, 2022Updated 3 years ago
- This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data…☆46Dec 15, 2025Updated 3 months ago
- ☆30Apr 10, 2025Updated 11 months ago
- a toolbox for metabolomic data analysis, visualization and ‘omic’ integration☆13Jun 21, 2018Updated 7 years ago
- This repository contains scripts related to Surendran P, Stewart I et al. Nature Medicine 2022 "Rare and common genetic causes of chemica…☆18Jul 15, 2022Updated 3 years ago
- Mass Spectrometry Tool☆25Jun 12, 2024Updated last year
- 个人科研笔记网站☆21Mar 29, 2025Updated 11 months ago
- A lightweight genetic algorithm library written in pure Python (currently only 3.x).☆12Mar 2, 2018Updated 8 years ago
- Core Utils for Mass Spectrometry Data☆17Updated this week
- Interfacing R's Spectra package with the Python world.☆13Mar 6, 2026Updated 2 weeks ago
- DLL and SO from Bruker.☆12Feb 25, 2026Updated 3 weeks ago
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Jun 3, 2025Updated 9 months ago
- Mistle is a fast spectral search engine. It uses a fragment-indexing technique and SIMD intrinsics to match experimental MS2 spectra to l…☆16Oct 6, 2023Updated 2 years ago
- EuBIC-MS Developers Meeting 2025 on Computational Mass Spectrometry☆11Nov 8, 2024Updated last year
- Learn Julia in one workday!☆13Jan 7, 2020Updated 6 years ago
- Reproducible research workshop RStudio and git demo repository☆11Nov 12, 2016Updated 9 years ago
- JS 2D colormap to color encode scatterplots☆14Oct 13, 2017Updated 8 years ago
- Based on COMSOL Livelink for MATLAB☆20Dec 21, 2023Updated 2 years ago
- EuBIC 2023 developer's meeting☆13Jan 16, 2023Updated 3 years ago
- Quantitative Analysis of Mass Spectrometry Data☆68Oct 20, 2025Updated 5 months ago
- Toolbox for the processing and analysis of MALDI-MSI data☆15Sep 10, 2025Updated 6 months ago
- Central repository for the Multiplexed Tissue Imaging Workshop 2023.☆10Jan 9, 2023Updated 3 years ago
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆13Mar 11, 2026Updated last week
- SPIKE a collaborative development for a FT-spectroscopy processing program.☆20Mar 4, 2026Updated 2 weeks ago
- LaTeX Overlay Generator☆15Apr 12, 2016Updated 9 years ago
- BioDWH2 is an easy-to-use, automated, graph-based data warehouse and mapping tool for bioinformatics and medical informatics.☆18Nov 21, 2025Updated 4 months ago