FlashRNA - An Efficient Model for Regulatory Genomics
☆18Oct 15, 2025Updated 11 months ago
Alternatives and similar repositories for flashrna
Users that are interested in flashrna are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analyses related to the Borzoi paper.☆32Dec 14, 2025Updated 9 months ago
- ☆12Feb 6, 2023Updated 3 years ago
- A Python library for fast and easy access to genomic resources such as sequence, data tracks, and annotations☆63Updated this week
- Gencode UTR fix☆17Jan 11, 2023Updated 3 years ago
- ☆19Aug 15, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Machine learning methods for DNA sequence analysis.☆66Updated this week
- Causal inference, differential expression, and co-expression for scRNA-seq☆21Jun 11, 2026Updated 3 months ago
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆24Jun 8, 2026Updated 3 months ago
- Numerical Run Length Encoding and Arithmetic in Cython☆19Aug 2, 2026Updated last month
- Snakemake pipeline for microexon discovery and quantification☆21Jan 16, 2025Updated last year
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆18Jul 5, 2019Updated 7 years ago
- Jax code for functional genomics ML☆14Mar 5, 2025Updated last year
- splicing and feature maps for RBPs☆25Sep 8, 2026Updated last week
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆53Jul 30, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆24Sep 1, 2021Updated 5 years ago
- ☆25Aug 20, 2024Updated 2 years ago
- ☆24Jul 27, 2026Updated last month
- Dataloader for applying sequence models to personalized genomics☆29Updated this week
- ☆42Jul 3, 2025Updated last year
- RiboNN: predicting translation efficiencies from mRNA sequences☆67Jan 12, 2026Updated 8 months ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆15Sep 26, 2017Updated 8 years ago
- Tissue-specific variant effect predictions on splicing☆44May 23, 2023Updated 3 years ago
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆21Mar 2, 2026Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆15Oct 16, 2025Updated 11 months ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆36Jun 3, 2026Updated 3 months ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 3 years ago
- RNA-seq prediction with deep convolutional neural networks.☆264Updated this week
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆364Updated this week
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆68Aug 10, 2026Updated last month
- A SingleCell RNASeq pre-processing pipeline built on snakemake☆14Jan 11, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cherimoya is a lightweight sequence-to-function (S2F) model that is small, fast, and easy to use. Now usable by agents.☆61Updated this week
- GraphPart, a data partitioning method for ML on biological sequences☆36Oct 26, 2023Updated 2 years ago
- ☆13Jan 23, 2025Updated last year
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Apr 12, 2014Updated 12 years ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆42Jan 14, 2025Updated last year
- ☆13Jul 5, 2019Updated 7 years ago
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago