calico / borzoi-paperLinks
Analyses related to the Borzoi paper.
☆25Updated 3 weeks ago
Alternatives and similar repositories for borzoi-paper
Users that are interested in borzoi-paper are comparing it to the libraries listed below
Sorting:
- ☆18Updated last year
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Updated 11 months ago
- ☆20Updated last month
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆71Updated 2 years ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆28Updated 2 years ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆55Updated 2 weeks ago
- ☆24Updated 4 months ago
- ☆84Updated last month
- ☆25Updated last year
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆44Updated 3 months ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 9 months ago
- code to run sei and obtain sei and sequence class predictions☆110Updated 3 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 5 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆82Updated last year
- ☆26Updated 8 months ago
- ☆57Updated last month
- Molecular interactions inference from single-cell multi-omics data☆30Updated 2 months ago
- ☆36Updated 3 years ago
- polyApipe☆19Updated 11 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆30Updated last month
- A method for analyzing scATAC-seq experiments.☆34Updated 6 months ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆51Updated 2 months ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated last year
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆20Updated 5 months ago
- Snakemake workflow for comparing E-G links to experimental data☆23Updated 2 months ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 3 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆59Updated 2 weeks ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated 3 months ago