Analyses related to the Borzoi paper.
☆32Oct 1, 2026Updated 2 weeks ago
Alternatives and similar repositories for borzoi-paper
Users that are interested in borzoi-paper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Machine learning methods for DNA sequence analysis.☆66Sep 30, 2026Updated 2 weeks ago
- RNA-seq prediction with deep convolutional neural networks.☆267Sep 30, 2026Updated 2 weeks ago
- FlashRNA - An Efficient Model for Regulatory Genomics☆19Oct 15, 2025Updated last year
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆99Jun 10, 2026Updated 4 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆87Jun 4, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆69Aug 10, 2026Updated 2 months ago
- [NPJ AI] A foundation model for individual genome modelling☆29May 9, 2026Updated 5 months ago
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆364Oct 7, 2026Updated last week
- ☆19Oct 21, 2024Updated last year
- ☆25Aug 20, 2024Updated 2 years ago
- ☆22Jun 11, 2026Updated 4 months ago
- ☆18Oct 21, 2024Updated last year
- Code for improving the performance of sequence-to-expression models for making individual-specific gene expression predictions by fine-tu…☆20Mar 15, 2026Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆21Dec 20, 2025Updated 9 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆60Jul 19, 2026Updated 2 months ago
- Implementation of AlphaGenome, Deepmind's updated genomic attention model☆101Mar 25, 2026Updated 6 months ago
- For fine-tuning Enformer using paired WGS & gene expression data☆32Aug 27, 2025Updated last year
- AlphaGenome PyTorch port☆162Sep 15, 2026Updated last month
- ☆105Apr 3, 2026Updated 6 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 11 months ago
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆575Jun 26, 2026Updated 3 months ago
- R package for nucleotide conversion sequencing data analysis☆17Jan 13, 2026Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆10Dec 11, 2024Updated last year
- ☆42Jul 3, 2025Updated last year
- slncky is a tool for lncRNA discovery from RNA-Seq data. slncky filters a high-quality set of noncoding transcripts, discovers lncRNA or…☆13Apr 13, 2021Updated 5 years ago
- A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution☆15Jul 14, 2026Updated 3 months ago
- Cherimoya is a lightweight sequence-to-function (S2F) model that is small, fast, and easy to use. Now usable by agents.☆69Oct 6, 2026Updated last week
- EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics☆34Jun 22, 2025Updated last year
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆53Updated this week
- Sequential regulatory activity predictions with deep convolutional neural networks.☆475Jan 15, 2026Updated 9 months ago
- Bayesian analysis of MPRA and other high-throughput genomic assays☆10Jul 27, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- fork of the GPU genome aligner☆40Sep 23, 2026Updated 3 weeks ago
- A Python library for fast and easy access to genomic resources such as sequence, data tracks, and annotations☆64Oct 8, 2026Updated last week
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 6 years ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆27Jun 26, 2024Updated 2 years ago
- ☆11Aug 10, 2023Updated 3 years ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated last year
- deep learning-inspired explainable sequence model for transcription initiation☆109Mar 3, 2025Updated last year