calico / borzoi-paperLinks
Analyses related to the Borzoi paper.
☆23Updated 2 months ago
Alternatives and similar repositories for borzoi-paper
Users that are interested in borzoi-paper are comparing it to the libraries listed below
Sorting:
- ☆18Updated last year
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Updated 10 months ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆27Updated 2 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated last year
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 8 months ago
- ☆20Updated 7 months ago
- A method for analyzing scATAC-seq experiments.☆34Updated 5 months ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆28Updated 2 years ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆71Updated 2 years ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆52Updated this week
- ☆36Updated 3 years ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆49Updated last month
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 2 months ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 3 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Updated 3 weeks ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆20Updated 8 months ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- ☆24Updated 3 months ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 11 months ago
- Pipeline to run scE2G☆32Updated last month
- Saluki, a method to predict mRNA half-lives from sequence☆27Updated 3 years ago
- A short tutorial to using DL and keras for genomics with sequence data.☆15Updated 5 years ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆38Updated last year
- splicing and feature maps for RBPs☆25Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆15Updated 5 months ago
- Toolkit for single-cell DNA methylation analysis.☆44Updated last week
- High-definition modeling of chromatin + transcriptomics data☆25Updated 8 months ago