soedinglab / CCMpred
Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
☆107Updated last year
Alternatives and similar repositories for CCMpred:
Users that are interested in CCMpred are comparing it to the libraries listed below
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆100Updated 3 years ago
- ☆104Updated last year
- Repository for publicly available deep learning models developed in Rosetta community☆111Updated 3 years ago
- trRosetta for protein design☆177Updated 3 years ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆122Updated 3 years ago
- Convenience Python APIs for antibody numbering using ANARCI☆94Updated last month
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆127Updated last month
- Public repository describing training and testing of AntiBERTa.☆58Updated last year
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆53Updated 2 years ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆147Updated last year
- Efficient evolution from protein language models☆192Updated last year
- AbLang: A language model for antibodies☆137Updated last year
- Predict the structure of immune receptor proteins☆128Updated last month
- ☆101Updated 2 years ago
- ☆98Updated 8 months ago
- ☆61Updated 3 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆83Updated last year
- Protein design and variant prediction using autoregressive generative models☆97Updated last year
- ☆121Updated last year
- A compilation of deep learning methods for protein design☆97Updated 2 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆99Updated 3 years ago
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆109Updated last year
- Official repo of the modular BioExcel version of HADDOCK☆129Updated this week
- Rifdock Library for Conformational Search☆151Updated 9 months ago
- Code for ColabDock paper☆136Updated 4 months ago
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…☆174Updated 5 months ago
- A Python 3 version of the protein descriptor package propy☆41Updated 2 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆97Updated 5 months ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆94Updated last year
- Masif seed paper repository☆145Updated last year