Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
☆114Nov 8, 2023Updated 2 years ago
Alternatives and similar repositories for CCMpred
Users that are interested in CCMpred are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Faster, more accurate and entirely open source method for predicting contacts in proteins☆12May 21, 2018Updated 8 years ago
- Remote protein homology detection suite.☆628Aug 12, 2025Updated last year
- Pseudo Likelihood Maximization for protein in Julia☆52May 15, 2025Updated last year
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆61Oct 17, 2022Updated 3 years ago
- ResPRE is an algorithm for protein residue-residue contact-map prediction☆21May 20, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆11Apr 25, 2021Updated 5 years ago
- Contact map alignment☆44Feb 3, 2021Updated 5 years ago
- Deep residual neural network for protein contact/distance prediction developed by Xu group☆80Sep 13, 2020Updated 6 years ago
- Contact map alignment☆16May 10, 2018Updated 8 years ago
- Deep convolutional neural networks for protein contact map prediction☆23Aug 5, 2019Updated 7 years ago
- ☆20Jul 16, 2021Updated 5 years ago
- ☆34Sep 19, 2025Updated last year
- ☆40Apr 24, 2018Updated 8 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆100Jan 26, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- We present Envision, an accurate predictor of protein variant molecular effect, trained using large-scale experimental mutagenesis data. …☆20Jan 5, 2018Updated 8 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Mar 25, 2019Updated 7 years ago
- DeepContact Software☆26Jun 16, 2018Updated 8 years ago
- ☆137Sep 14, 2022Updated 4 years ago
- functional genomic data integration☆10Sep 22, 2019Updated 6 years ago
- Fast and easy contact prediction.☆38May 24, 2024Updated 2 years ago
- Deep transformer for predicting interchain residue-residue distances of protein complexes☆14Mar 19, 2024Updated 2 years ago
- Attempt at reproduction of AlphaFold2☆99Jul 30, 2026Updated last month
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Mar 7, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python 3 implementation of Jinbo Xu's paper "Distance-based protein folding powered by deep learning", PNAS August 20, 2019 116 (34)☆22Aug 2, 2022Updated 4 years ago
- Contact Prediction ToolKit☆22Jul 23, 2026Updated last month
- Contact-based protein structure prediction☆10Feb 12, 2019Updated 7 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆40Jul 25, 2024Updated 2 years ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆31Aug 9, 2024Updated 2 years ago
- ☆16Jun 22, 2020Updated 6 years ago
- a pytorch version for GREMLIN, used to predict the protein contacts by coevolution method.☆17May 30, 2021Updated 5 years ago
- Improved ab initio protein structure reconstruction☆15Mar 7, 2018Updated 8 years ago
- Inference of couplings in proteins and RNAs from sequence variation☆128Jan 21, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module☆24Jan 27, 2022Updated 4 years ago
- Improved contact predictions using the recognition of protein like contact patterns.☆14May 18, 2018Updated 8 years ago
- An evolutionary context-integrated deep learning framework for protein engineering☆72Jun 1, 2022Updated 4 years ago
- ☆18Mar 13, 2024Updated 2 years ago
- ☆18Aug 10, 2020Updated 6 years ago
- A protein 3D structure prediction application☆67May 5, 2021Updated 5 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Jan 30, 2022Updated 4 years ago