cbalbin-bio / pymol-color-alphafoldView external linksLinks
PyMOL extension to color AlphaFold structures by confidence (pLDDT).
☆123Jul 23, 2024Updated last year
Alternatives and similar repositories for pymol-color-alphafold
Users that are interested in pymol-color-alphafold are comparing it to the libraries listed below
Sorting:
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Aug 10, 2023Updated 2 years ago
- Some notes (cookbook) for pyMol. Protein Crystallography course.☆15Jun 19, 2021Updated 4 years ago
- EViS: an Enhanced Virtual Screening Approach based on Pocket Ligand Similarity☆14Dec 7, 2021Updated 4 years ago
- ☆116Dec 7, 2022Updated 3 years ago
- Python snippets for PyMOL to be run in Jupyterlab via the jupyterlab-snippets-multimenus extension.☆25May 9, 2024Updated last year
- Code to accompany "Practical Cheminformatics With Open Source Software"☆16Feb 24, 2022Updated 3 years ago
- scripts to visualise results of alphafold2 and 3 multimer runs☆18May 28, 2024Updated last year
- OpenSMOG is a Python library for performing molecular dynamics simulations using Structure-Based Models. OpenSMOG uses OpenMM.☆12Updated this week
- Structure-conditioned masked language modeling for protein sequence design☆70Jan 31, 2024Updated 2 years ago
- ChEMBL Similarity Search☆17Nov 28, 2020Updated 5 years ago
- A parallel molecular docking program based on AutoDock Vina☆19Sep 29, 2025Updated 4 months ago
- Program to create tautomers and ionisation states relevant to physiological pH.☆10May 8, 2017Updated 8 years ago
- In silico directed evolution of peptide binders with AlphaFold☆261Jan 5, 2026Updated last month
- Generate images of molecules and their properties for use in presentations and reports☆44Jul 21, 2022Updated 3 years ago
- Paper for release☆11Sep 24, 2021Updated 4 years ago
- A ready-to-use energy diagram drawing program☆12Nov 23, 2023Updated 2 years ago
- Kinome-wide structural pocket similarity☆10Dec 26, 2022Updated 3 years ago
- some tools for working with protein (PDB) files in tensorflow☆11Jul 9, 2019Updated 6 years ago
- Protein Sequence Evolutionary Information Language Model☆13Oct 5, 2023Updated 2 years ago
- example demonstrating a free energy estimation starting from OFF and OpenMM☆12Oct 21, 2020Updated 5 years ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆21Jan 15, 2024Updated 2 years ago
- ☆37Oct 16, 2024Updated last year
- PDBFixer fixes problems in PDB files☆622Oct 30, 2025Updated 3 months ago
- A pipeline to do virtual screening☆10Oct 4, 2023Updated 2 years ago
- ChEMBL Database used to create Lipinski Descriptors (ADME Pharmokinetic Profile) to use in a Random Forest Regression Model☆15Nov 8, 2020Updated 5 years ago
- Building more accurate protein structures from backbone torsion angles☆14Mar 21, 2025Updated 10 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated last year
- The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websear…☆86Sep 19, 2025Updated 4 months ago
- ResPRE is an algorithm for protein residue-residue contact-map prediction☆21May 20, 2019Updated 6 years ago
- Universal framework for physically based computational protein design☆37Aug 19, 2023Updated 2 years ago
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 4 years ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆98Aug 29, 2023Updated 2 years ago
- Protein design and variant prediction using autoregressive generative models☆24Feb 27, 2023Updated 2 years ago
- STRIDE: Protein secondary structure assignment from atomic coordinates☆15Apr 25, 2022Updated 3 years ago
- To run metadynamics simulations using openMM (based on Peter Eastman's script)☆13Mar 18, 2019Updated 6 years ago
- Collected scripts for Pymol☆511Feb 7, 2026Updated last week
- Database of Interacting Protein Structures (DIPS)☆104Jan 26, 2024Updated 2 years ago
- ☆43Jan 10, 2024Updated 2 years ago
- Containerised components for cheminformatics and computational chemistry☆36May 23, 2023Updated 2 years ago