tests for statistical significance of clustering
☆38Nov 21, 2018Updated 7 years ago
Alternatives and similar repositories for sigclust2
Users that are interested in sigclust2 are comparing it to the libraries listed below
Sorting:
- ☆11May 30, 2023Updated 2 years ago
- MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between cha…☆10Sep 7, 2022Updated 3 years ago
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆11Oct 31, 2023Updated 2 years ago
- Calibrated clustering via knockoffs for single-cell genomics☆10Feb 13, 2025Updated last year
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- A shiny app for metacell analysis☆10Feb 26, 2026Updated last week
- A database of useful gene signatures for single-cell analysis☆28May 19, 2025Updated 9 months ago
- Robust Integration of Single-Cell Cytometry Datasets☆32Aug 29, 2025Updated 6 months ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 2 years ago
- distinct: a method for differential analyses via hierarchical permutation tests☆11Dec 4, 2023Updated 2 years ago
- Phylogenetic plots for R and ggplot☆27Oct 3, 2012Updated 13 years ago
- ☆12Jul 22, 2025Updated 7 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated 11 months ago
- An R package designed to demultiplex cell hashing data☆31Feb 10, 2026Updated 3 weeks ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Apr 16, 2025Updated 10 months ago
- clusterBMA: Bayesian Model Averaging for Clustering☆13Feb 5, 2024Updated 2 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- Size-constrained Clustering in R☆33Nov 29, 2023Updated 2 years ago
- An R package for multi-dimensional pathway enrichment analysis☆17Jan 8, 2026Updated last month
- ☆14Feb 24, 2020Updated 6 years ago
- The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Se…☆20Updated this week
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- Gene Expression Decomposition and Integration☆19Feb 9, 2026Updated 3 weeks ago
- weighted indexes for clustering evaluation☆14Apr 18, 2020Updated 5 years ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated last year
- Statistical Inference for Unsupervised Learning☆16Feb 26, 2026Updated last week
- Pairwise Hierarchical Model☆20Mar 11, 2022Updated 3 years ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆26Feb 23, 2026Updated last week
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆48Sep 18, 2025Updated 5 months ago
- Comparison, benchmarking & QC of epigenetic datasets☆17Dec 2, 2025Updated 3 months ago
- 🐶 hlabud: HLA genotype analysis in R☆17Apr 11, 2025Updated 10 months ago
- Toolbox for performing gene set enrichment analysis in Matlab (including ensemble enrichment)☆17Nov 5, 2023Updated 2 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Apr 22, 2019Updated 6 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆141Jul 23, 2025Updated 7 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆123Sep 7, 2024Updated last year
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Nov 18, 2018Updated 7 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Feb 8, 2023Updated 3 years ago
- Scripts used for my UseR!2015 presentation on the network structure of CRAN☆22Apr 12, 2017Updated 8 years ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago