tests for statistical significance of clustering
☆38Nov 21, 2018Updated 7 years ago
Alternatives and similar repositories for sigclust2
Users that are interested in sigclust2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12May 30, 2023Updated 3 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- Code for preparing and running the imageCCA method.☆20Aug 2, 2017Updated 8 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Phylogenetic plots for R and ggplot☆27Oct 3, 2012Updated 13 years ago
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆10Oct 31, 2023Updated 2 years ago
- ☆13Jul 22, 2025Updated 10 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- Toolbox for performing gene set enrichment analysis in Matlab (including ensemble enrichment)☆17Nov 5, 2023Updated 2 years ago
- distinct: a method for differential analyses via hierarchical permutation tests☆13Dec 4, 2023Updated 2 years ago
- Complex Heatmaps Using Base Graphics☆16Mar 29, 2026Updated 2 months ago
- A R package for multi-dimensional data visualization☆11Jul 15, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Calibrated clustering via knockoffs for single-cell genomics☆11Feb 13, 2025Updated last year
- ☆14Feb 24, 2020Updated 6 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Apr 16, 2025Updated last year
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆30Updated this week
- Scripts used for my UseR!2015 presentation on the network structure of CRAN☆22Apr 12, 2017Updated 9 years ago
- A shiny app for metacell analysis☆10Jun 1, 2026Updated 2 weeks ago
- MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between cha…☆10Sep 7, 2022Updated 3 years ago
- Statistical Inference for Unsupervised Learning☆17Apr 7, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Programming for Biology @ CSHL 2023☆14Oct 17, 2025Updated 7 months ago
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Mar 5, 2026Updated 3 months ago
- An R package designed to demultiplex cell hashing data☆32Updated this week
- Systematically learn and evaluate the latent geometry of high-dimensional data, with a focus on scRNAseq analysis☆106Apr 1, 2026Updated 2 months ago
- A database of useful gene signatures for single-cell analysis☆28May 19, 2025Updated last year
- ☆15Jan 16, 2024Updated 2 years ago
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆25Dec 3, 2025Updated 6 months ago
- ☆12Apr 28, 2026Updated last month
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆21Nov 17, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆19Aug 29, 2023Updated 2 years ago
- Robust Image Rendering Support for 'ggplot2'☆48Oct 16, 2025Updated 8 months ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- Real-time Markdown previewer☆27May 30, 2026Updated 2 weeks ago
- ImageJ plugins☆14Nov 29, 2023Updated 2 years ago
- Stochastic Neighbor Embedding Experiments in R☆14Sep 7, 2024Updated last year
- Hungarian tokenizer.☆14Mar 15, 2022Updated 4 years ago