Personal notes about work- and coding-related topics
☆20Mar 22, 2023Updated 3 years ago
Alternatives and similar repositories for Notes
Users that are interested in Notes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆100Mar 18, 2023Updated 3 years ago
- ☆10Jan 19, 2019Updated 7 years ago
- GitHub template repository for creating new barebones Nextflow pipelines, using the Arcadia-Science/nextflow-template cookiecutter templa…☆13Mar 21, 2023Updated 3 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆40May 1, 2023Updated 3 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆27Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- FASTR, an efficient file format designed for lossless storage of sequencing data as numerical formats. Read more: https://www.biorxiv.org…☆12Oct 5, 2026Updated 3 weeks ago
- ☆21Dec 26, 2025Updated 10 months ago
- Granular Functional Filtering (Gruffi) to isolate stressed cells☆14Nov 7, 2024Updated last year
- An introduction about the Genome-in-a-Bottle project☆26Aug 30, 2019Updated 7 years ago
- Bioinformatics Pipeline☆12Oct 7, 2022Updated 4 years ago
- Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)☆10Jul 22, 2020Updated 6 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆34Dec 1, 2025Updated 10 months ago
- ☆70Mar 27, 2026Updated 7 months ago
- API for HOMER in R for Genomic Analysis using Tidy Conventions☆19Dec 1, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆19Oct 7, 2026Updated 3 weeks ago
- Code and metadata for glioblastoma matched analysis☆10Jan 19, 2019Updated 7 years ago
- ROAD facilitates the design of RNA nanostructures using the RNA origami method.☆12Sep 23, 2024Updated 2 years ago
- Virtual (in silico) or electronic PCR (ePCR) primers/probes or microRNA or CRISPR RNA search against whole genome(s) or a list of chromos…☆14Updated this week
- Analysis pipeline for RNA structural probing mutational profiling data sequenced on Nanopore devices☆12Feb 10, 2024Updated 2 years ago
- ☆11Feb 12, 2024Updated 2 years ago
- ☆10Nov 20, 2025Updated 11 months ago
- An r package that works as a wrapper to homologene☆49Nov 2, 2023Updated 2 years ago
- MethyScan: A tool for methylation specific PCR primer design and evaluation☆16Aug 20, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Gene- and Pathway-based Framework for Multi-omics Data Intergration☆10Jan 21, 2022Updated 4 years ago
- Event page: https://www.csc.fi/web/training/-/single-cell-rnaseq-r-2018☆13Sep 24, 2018Updated 8 years ago
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 4 years ago
- Deep learning in genomics☆20Jan 26, 2019Updated 7 years ago
- ☆15Jul 7, 2023Updated 3 years ago
- PharmGKB NGS Pipeline☆19Oct 2, 2018Updated 8 years ago
- ISOform-guided prediction of epiTOPEs in cancer☆13Apr 10, 2023Updated 3 years ago
- ☆18Oct 21, 2024Updated 2 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆15Jan 27, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SPIE-AAPM-NCI PROSTATEx Challenges-The PROSTATEx Challenge (" SPIE-AAPM-NCI Prostate MR Classification Challenge”) focused on quantitati…☆10Feb 18, 2021Updated 5 years ago
- HIVdb webservice client☆13Jan 22, 2026Updated 9 months ago
- epiTCR: a highly sensitive predictor for TCR–peptide binding☆16Aug 15, 2025Updated last year
- Tutorial with snakemake and Scientific Filesystem☆16Nov 11, 2020Updated 5 years ago
- This is a stand-alone version of RSAT matrix-clustering. This version is faster and simplified compared to the original RSAT matrix-clust…☆12Aug 26, 2025Updated last year
- Implementations of syncmer-based long read mappers☆10Mar 8, 2024Updated 2 years ago
- scRNA-seq data visualization from scrattch☆30Aug 20, 2025Updated last year