Documentation for PEP specification and all PEPkit software
☆10Oct 26, 2026Updated this week
Alternatives and similar repositories for pepspec
Users that are interested in pepspec are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Project metadata manager for biological sample metadata in Python☆41Oct 1, 2026Updated 3 weeks ago
- Calculate and plot distributions of genomic ranges☆27Apr 23, 2025Updated last year
- A decoder that automatically detects compression format (gzip, bzip2, xz, zstd) via external crates. Includes encoder as well.☆13Jan 8, 2026Updated 9 months ago
- This repository contains the installation zip file, user manual, example data, and source code for the PyXlinkViewer plugin for PyMOL v2☆10Jul 3, 2023Updated 3 years ago
- Manager for multi-container computing environments☆25Mar 6, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Reference genome resource manager☆74Oct 6, 2026Updated 3 weeks ago
- Benchmarking Mass Spectrometry Identification Methods.☆12Jan 18, 2024Updated 2 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- Framework for building R interfaces to shell commands☆17Oct 12, 2020Updated 6 years ago
- Spliced peptide identification from in vitro digestions of polypeptides with purified proteasomes☆11Jun 28, 2024Updated 2 years ago
- A web API and database for biological sample metadata☆22Updated this week
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆10Oct 31, 2023Updated 2 years ago
- A terminal UI for monitoring Snakemake workflows☆26Jul 20, 2026Updated 3 months ago
- web.py based tool to automatically convert argparse-like command line interfaces to simple web interfaces☆24Jan 11, 2017Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The uncompromising Snakemake code formatter☆196Updated this week
- A Thermo XCalibur Method (.meth) file reader, extracter, and converter command-line program for mass spectrometry researchers.☆13Jan 13, 2019Updated 7 years ago
- scVIVA-Tools: A unified toolkit for spatial transcriptomics analysis☆15Oct 21, 2026Updated last week
- Data Hub makes lab instrument data instantly accessible to people, pipelines, and agents☆16Updated this week
- Finding CpG islands in genome sequences☆13Jul 26, 2017Updated 9 years ago
- Learning to Segment Human Body Parts with Synthetically Trained Deep Convolutional Networks☆12Mar 17, 2021Updated 5 years ago
- Workflow management system for the automated and distributed analysis of large-scale experimental data.☆13Oct 3, 2024Updated 2 years ago
- Efficient algorithms for designing orthogonal DNA sequence libraries☆13Oct 23, 2024Updated 2 years ago
- de Bruijn Graph-based read aligner☆11Jul 19, 2016Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Interactive tree visualizations in Python (powered by Vega).☆11Sep 26, 2019Updated 7 years ago
- LoopPredictor: Predicting unknown enhancer-mediated genome topology by an ensemble machine learning model☆14Jun 18, 2021Updated 5 years ago
- Modular job submitter for arbitrary pipelines or commands.☆25Oct 22, 2026Updated last week
- Create cwl workflows by writing a simple Python script☆39Apr 29, 2020Updated 6 years ago
- Polygonal curve approximation for python☆12May 10, 2025Updated last year
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 8 years ago
- Find Co-Abundant Groups of Genes☆12Aug 3, 2020Updated 6 years ago
- Implementation of Wasserstein Generative Adversarial Networks using Tensorflow☆14Jul 25, 2018Updated 8 years ago
- The spatial representation learning for single-cell spatial transcriptomics☆17Aug 4, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆17May 16, 2023Updated 3 years ago
- Python module and CLI tool to perform operations on BED files☆13Jan 23, 2020Updated 6 years ago
- Utilities and applications for the FlatGov project by Demand Progress☆20Feb 8, 2023Updated 3 years ago
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- Standard analysis routine for samples that were generated with Lexogen's QuantSeq pool library preparation kit.☆12Oct 31, 2022Updated 3 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Sep 28, 2026Updated last month
- Scripts for analyzing PacBio AAV sequences☆15May 3, 2024Updated 2 years ago