[JCIM 2026] Biasing Conformational Sampling in AlphaFold 3 and Boltz-2 via Pair Representation Scaling
☆32Aug 20, 2026Updated last week
Alternatives and similar repositories for pair-representation-scaling
Users that are interested in pair-representation-scaling are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PyRosetta4 v2026-02-06 with (Global Interpreter Lock) disabled☆20Mar 22, 2026Updated 5 months ago
- Metadiffusion implemented in Boltz-2☆24Feb 23, 2026Updated 6 months ago
- ⛓️ Boltz with restraint-guided inference☆21Aug 15, 2026Updated 2 weeks ago
- Bayesian Optimization for protein design and mining☆28Jul 2, 2026Updated last month
- ☆15Jun 19, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Tree-Invent: A novel molecular generative model constrained with topological tree☆14Jul 26, 2023Updated 3 years ago
- Official implementation of RuSH (Scaffold Hopping with Generative Reinforcement Learning). Includes ScaffoldFinder algorithm for 2D decor…☆23Feb 20, 2025Updated last year
- ☆13May 24, 2026Updated 3 months ago
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- IntelliFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction.☆228Jun 23, 2026Updated 2 months ago
- ESMDynamic repo☆35Jun 26, 2026Updated 2 months ago
- One protein is all you need (ICLR 2026)☆116Aug 1, 2026Updated 3 weeks ago
- Pharmacophore Elucidation with Convolutional Neural Networks and Reinforcement Learning☆18Apr 7, 2025Updated last year
- Explicit crosslinks in AlphaFold 3☆22Mar 17, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆55Apr 22, 2026Updated 4 months ago
- Protein design and sculpting using Rosetta and Deep learning methods (RFDiff and Alphafold2)☆69Updated this week
- Knowledge-Guided Diffusion Model for 3D Ligand-Pharmacophore Mapping☆51Jun 5, 2026Updated 2 months ago
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆55Jun 22, 2026Updated 2 months ago
- Public version for Distance-AF☆32Aug 17, 2025Updated last year
- Modelling protein conformational landscape with Alphafold☆61Aug 29, 2025Updated last year
- A flow matching model for generating conformational ensembles of protein backbones.☆50May 22, 2026Updated 3 months ago
- Official Implementation of CompassDock☆21Feb 13, 2026Updated 6 months ago
- Run protein structure prediction, binder design, and embeddings on Tenstorrent hardware — Boltz-2, ESMFold2, Protenix-v2, OpenFold3, Open…☆119Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆152May 18, 2026Updated 3 months ago
- Flexibility-conditioned protein structure design☆37Mar 10, 2026Updated 5 months ago
- ☆27May 16, 2026Updated 3 months ago
- ☆18Mar 13, 2024Updated 2 years ago
- Python rich client for visual protein Sequence to Structure Analysis☆22Mar 31, 2026Updated 4 months ago
- PaiNN in jax☆11Jan 14, 2025Updated last year
- ☆259Feb 12, 2026Updated 6 months ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆83May 1, 2026Updated 3 months ago
- Official implementation for BioKinema☆30Aug 19, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆84Jun 10, 2026Updated 2 months ago
- composite-objective protein design☆361Aug 11, 2026Updated 2 weeks ago
- Combines FRESEAN mode analysis of a protein (based on a CG representation) with enhanced sampling using metadynamics☆17May 7, 2026Updated 3 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Apr 13, 2026Updated 4 months ago
- A Unified GPU-Accelerated Platform for High-Throughput Structure-Based, Ligand-Based, and Synergistic Hybrid Virtual Screening☆31Feb 24, 2026Updated 6 months ago
- ☆147Jul 14, 2026Updated last month
- Interpretable, protein structure-based prediction of missense variant deleteriousness.☆23Aug 6, 2025Updated last year