Bayesian Optimization for protein design and mining
☆28Jul 2, 2026Updated 2 months ago
Alternatives and similar repositories for bopep
Users that are interested in bopep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Feynman-Kac steering for controllable protein diffusion☆38Aug 16, 2026Updated last month
- Data Processing Kitchen Sink for proteomics data☆15Jun 15, 2026Updated 3 months ago
- ☆15Jun 19, 2026Updated 3 months ago
- [JCIM 2026] Biasing Conformational Sampling in AlphaFold 3 and Boltz-2 via Pair Representation Scaling☆32Aug 20, 2026Updated 3 weeks ago
- ☆102Jul 24, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This repository enables inference and sampling for Dyno Psi-1, a de novo miniprotein binder design model.☆24Aug 25, 2026Updated 3 weeks ago
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆55Jun 22, 2026Updated 2 months ago
- A flow matching model for generating conformational ensembles of protein backbones.☆52May 22, 2026Updated 3 months ago
- HBDesigner is an algorithm that designs highly-connected hydrogen bonding networks that fit the requested design constraints onto an inpu…☆20Aug 31, 2026Updated 2 weeks ago
- A modular and user-friendly Python framework for protein and ligand engineering workflows on SLURM clusters☆107Updated this week
- Virus Protein Structural Analysis Toolkit☆15Sep 9, 2024Updated 2 years ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆64Feb 3, 2026Updated 7 months ago
- ☆32Oct 7, 2025Updated 11 months ago
- Potts model-based protein sequence design☆114Jul 1, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Associated code/pipeline for the publication "AI-assisted protein design to rapidly convert antibody sequences to intrabodies targeting d…☆16Feb 18, 2025Updated last year
- ☆17May 18, 2026Updated 4 months ago
- A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library☆17Feb 18, 2025Updated last year
- EvolveX, a de novo antibody computational design pipeline.☆24Sep 18, 2025Updated last year
- Latents-based conformational control in OpenFold3.☆80May 25, 2026Updated 3 months ago
- mdml: Deep Learning for Molecular Simulations☆55May 17, 2025Updated last year
- Neural Iterative Selection-Expansion using LigandMPNN/LASErMPNN and Boltz-2x☆69Aug 11, 2026Updated last month
- Protein stability prediction using rewired protein generative models☆95Jul 15, 2026Updated 2 months ago
- ☆55Jan 27, 2026Updated 7 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆97Jul 31, 2026Updated last month
- An open-source platform for developing protein models beyond AlphaFold.☆11Jul 15, 2025Updated last year
- Versatile human antibody sequence design☆22Apr 12, 2026Updated 5 months ago
- ☆39Aug 28, 2023Updated 3 years ago
- Python rich client for visual protein Sequence to Structure Analysis☆22Mar 31, 2026Updated 5 months ago
- ☆12Nov 16, 2023Updated 2 years ago
- ☆25Jun 10, 2026Updated 3 months ago
- ☆18Mar 13, 2024Updated 2 years ago
- ☆30Apr 30, 2026Updated 4 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A protein language model for intrinsically disordered regions☆18Sep 9, 2026Updated last week
- ☆15Apr 17, 2025Updated last year
- Model for predicting micro-millisecond motions from protein sequence and/or structure☆117Aug 20, 2026Updated 3 weeks ago
- ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models☆40Nov 25, 2024Updated last year
- Rank binders by structure modeling☆17Apr 10, 2026Updated 5 months ago
- A comprehensive repository of scripts, software, and tutorials for molecular evolution, computational protein design, and structural bioi…☆33Jul 26, 2026Updated last month
- One protein is all you need (ICLR 2026)☆116Aug 1, 2026Updated last month