Alternatives and similar repositories for GDFold2

Users that are interested in GDFold2 are comparing it to the libraries listed below

• ComputArtCMCG / ProBID-NET
  ☆15Updated 8 months ago
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆37Updated last year
• anirudhvenk / antibody-dpo
  ☆25Updated 8 months ago
• meilerlab / probabilities_design
  ☆15Updated 10 months ago
• masoudk / AsiteDesign
  ☆13Updated 2 years ago
• gitter-lab / metl-pretrained
  Pretrained METL models with minimal dependencies
  ☆16Updated 4 months ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆33Updated 2 years ago
• alepandini / DyNoPy
  DyNoPy
  ☆11Updated last year
• ProteinDesignLab / protpardelle-1c
  Updated Protpardelle models with more robust motif scaffolding and multichain support
  ☆66Updated last month
• johnnytam100 / AlphaCutter
  This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
  ☆16Updated 2 years ago
• KhondamirRustamov / FoldCraft
  Fold Conditioned protein design pipeline based on AF2Multimer Hallucination
  ☆49Updated 2 months ago
• bwicky / SAPP_DMX
  ☆27Updated 6 months ago
• danny305 / StabilityOracle
  ☆30Updated 4 months ago
• violet-sto / Bridge-IF
  Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"
  ☆18Updated 10 months ago
• HannesStark / CodonMPNN
  ☆30Updated last year
• Huatsing-Lau / PPB-Affinity-DataPrepWorkflow
  workflow used to prepare PPB-Affinity database
  ☆28Updated last year
• PKUliujl / GeoSeqBuilder
  ☆32Updated last year
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆21Updated 7 months ago
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆26Updated 6 years ago
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated 3 weeks ago
• matsagad / mres-project
  Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.
  ☆11Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆61Updated 8 months ago
• luwei0917 / BindingGYM
  ☆40Updated 6 months ago
• Junjie-Zhu / IDPFold
  Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold
  ☆26Updated last year
• KosinskiLab / alphafold3x
  Explicit crosslinks in AlphaFold 3
  ☆23Updated 10 months ago
• davidekim / parametric_barrels
  Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.
  ☆14Updated 2 months ago
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆36Updated 3 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆40Updated last year
• nohandsomewujun / FlowDesign
  ☆31Updated 5 months ago
• ZhuofanShen / Rosetta-Enzyme-Design-Pipeline
  The official GitHub repository for the Nature Communications paper "Computational Design of Generalist Cyclopropanases with Stereodiverge…
  ☆13Updated 2 weeks ago