Alternatives and similar repositories for cascadia

Users that are interested in cascadia are comparing it to the libraries listed below

• pFindStudio / pGlyco3
  ☆20Updated 4 months ago
• jingbo02 / Awesome-Denovo-Peptide-Sequencing
  Paper collection about de novo peptide Sequening
  ☆16Updated 4 months ago
• wfondrie / depthcharge
  A deep learning toolkit for mass spectrometry
  ☆79Updated 11 months ago
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆37Updated last week
• diogobor / Scout
  MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.
  ☆19Updated 2 weeks ago
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆127Updated 3 weeks ago
• wilhelm-lab / PROSPECT
  Proteomics Mass Spectrometry Datasets for Machine Learning
  ☆17Updated 10 months ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 4 years ago
• gagneurlab / spectralis
  ☆14Updated 8 months ago
• snijderlab / annotator
  A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.
  ☆26Updated 3 weeks ago
• MannLabs / alphadia
  modular & open DIA search
  ☆72Updated this week
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 5 months ago
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆27Updated 2 weeks ago
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆44Updated 3 months ago
• grosenberger / easypqp
  EasyPQP: Simple library generation for OpenSWATH
  ☆11Updated 2 months ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆46Updated this week
• Protea-Glycosciences / GlyCombo
  GlyCombo, a combinatorial glycan composition assignment tool
  ☆12Updated 4 months ago
• CompOmics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆65Updated 3 weeks ago
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆25Updated 2 months ago
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆40Updated last year
• bzhanglab / deep_learning_in_proteomics
  A list of tools on proteomics using deep learning
  ☆97Updated last year
• Nesvilab / diaTracer
  A diaPASEF spectrum-centric analysis tool
  ☆13Updated last month
• Functional-Metabolomics-Lab / FBMN-STATS
  FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks
  ☆38Updated this week
• Nesvilab / MSBooster
  MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring
  ☆19Updated last week
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆82Updated 3 months ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆43Updated this week
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆48Updated last week
• wilhelm-lab / spectrum_fundamentals
  Fundamentals public repo
  ☆10Updated 2 weeks ago
• mafreitas / tdf2mzml
  ☆26Updated last year
• wilhelm-lab / dlomix
  Python framework for Deep Learning in Proteomics
  ☆27Updated last week