Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data
☆33Mar 3, 2026Updated 4 months ago
Alternatives and similar repositories for cascadia
Users that are interested in cascadia are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆194Jul 9, 2026Updated last week
- modular & open DIA search☆110Updated this week
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago
- Paper collection about de novo peptide Sequening☆24Feb 5, 2025Updated last year
- ☆17Oct 1, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A diaPASEF spectrum-centric analysis tool☆14Mar 23, 2026Updated 3 months ago
- DIA-BERT: a pre-trained model for data-independent acquisition mass spectrometry-based proteomics data analysis☆24Sep 3, 2025Updated 10 months ago
- Post-processing peptide de novo sequences to improve their accuracy☆10Nov 29, 2022Updated 3 years ago
- Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment☆34Jun 26, 2026Updated 3 weeks ago
- Fundamental functions, annotation pipeline and constants for oktoberfest☆13Updated this week
- ☆34Updated this week
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆11Nov 22, 2024Updated last year
- A deep learning toolkit for mass spectrometry☆95May 31, 2026Updated last month
- ☆42Jul 14, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Framework for systematic discovery of novel complexes and differential analysis of cofractionation MS datasets☆14Nov 21, 2025Updated 8 months ago
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆17Jul 5, 2026Updated 2 weeks ago
- Democratizing ML in proteomics☆57May 6, 2026Updated 2 months ago
- ☆15Oct 16, 2023Updated 2 years ago
- High quality in silico spectral library generation for data-independent acquisition proteomics☆23Jun 19, 2026Updated last month
- Proteomics Mass Spectrometry Datasets for Machine Learning☆22Aug 16, 2024Updated last year
- Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling☆32Oct 15, 2024Updated last year
- A Python package for peptide sequence analysis built around ProForma 2.1 notation. Calculate masses, generate fragments, predict isotopic…☆18Jul 10, 2026Updated last week
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆42Jun 10, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆50Updated this week
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆55Updated this week
- DL model to predict HLA peptide presentation☆16Jan 31, 2024Updated 2 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆45Feb 23, 2024Updated 2 years ago
- An easy-to-use and interactive web application for FragPipe☆14Mar 8, 2026Updated 4 months ago
- A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML☆26Apr 17, 2026Updated 3 months ago
- ☆22Mar 26, 2025Updated last year
- Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidom…☆16Jun 1, 2023Updated 3 years ago
- Proteomics search & quantification so fast that it feels like magic☆301Jun 5, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Lorikeet is a JQuery plugin to view MS/MS spectra annotated with fragment ions.☆19Sep 7, 2023Updated 2 years ago
- ☆26Updated this week
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Jul 7, 2026Updated 2 weeks ago
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆461Jun 30, 2026Updated 2 weeks ago
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- PSI-MOD ontology for modified and unmodified amino acid residues☆16Jun 19, 2026Updated last month
- Multi-Omics Peptide Generator☆30Nov 6, 2025Updated 8 months ago