mulinlab / VarNoteLinks
Fast and scalable variant annotation tool
☆30Updated 3 years ago
Alternatives and similar repositories for VarNote
Users that are interested in VarNote are comparing it to the libraries listed below
Sorting:
- ☆24Updated 11 months ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- ☆51Updated 6 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last month
- ☆25Updated 7 months ago
- Enabling differential allele-specific analysis☆11Updated 11 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated last month
- ☆35Updated 4 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 3 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 8 months ago
- A variant caller for the GBA gene using WGS data☆23Updated last year
- Structural variant merging tool☆57Updated last year
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 5 months ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- ☆24Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆34Updated 2 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- ☆44Updated last year
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- A new tool to infer sex from massively parallel sequencing data.☆17Updated 6 months ago
- A simple script to create a customizable html file from an AnnotSV output.☆19Updated last year
- Structural variant (SV) analysis tools☆39Updated last year