QuackenbushLab / yarnLinks
YARN: Robust Multi-Tissue RNA-Seq Preprocessing and Normalization
☆13Updated last year
Alternatives and similar repositories for yarn
Users that are interested in yarn are comparing it to the libraries listed below
Sorting:
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Updated 3 years ago
- ☆15Updated 4 years ago
- kallisto index tag extractor☆20Updated 5 years ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 7 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated last week
- R package for benchmarking single cell analysis methods☆31Updated last year
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Updated 2 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- Differential Correlation across Ranked Samples☆12Updated 2 years ago
- An analytics package for single cell data☆22Updated 3 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- Collection of useful methods for single cell analysis☆14Updated 9 months ago
- Single-cell Scalable Visualization and Analytics☆25Updated 6 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Inference of switch-like differential expression along single-cell trajectories☆20Updated 7 years ago
- Transcript quantification import with automatic metadata detection☆68Updated 3 weeks ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 8 months ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated last month
- Dimensionality reduction for single cell RNA-seq data☆35Updated 5 years ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆38Updated last year
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago