Alternatives and similar repositories for yarn

Users that are interested in yarn are comparing it to the libraries listed below

• hms-dbmi / scw
  HSCI/Catalyst Single-cell RNA-Seq Workshop
  ☆19Updated 6 years ago
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 3 years ago
• HCBravoLab / scTreeViz
  R/Bioconductor package to interactively explore single cell clusters at multiple resolutions
  ☆10Updated 3 years ago
• maggiecrow / DEprior
  ☆15Updated 4 years ago
• pachterlab / kite
  kallisto index tag extractor
  ☆20Updated 5 years ago
• crazyhottommy / scRNA-seq-workshop-Fall-2019
  Harvard FAS informatics scRNAseq workshop website
  ☆37Updated 5 years ago
• stephaniehicks / scBatchPaper
  Code used for the single-cell RNA-Seq batch effects paper
  ☆10Updated 7 years ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated last week
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆31Updated last year
• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆44Updated 4 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated 2 years ago
• gjhunt / dtangle
  Cell type deconvolution from high-throughput gene expression profiling experiments.
  ☆31Updated 4 years ago
• const-ae / transformGamPoi
  Variance stabilizing transformation for Gamma Poisson distributed data
  ☆22Updated 2 years ago
• kkdey / CountClust
  A R package for Grade of Membership model and Visualization of counts data:
  ☆31Updated 4 years ago
• shazanfar / DCARS
  Differential Correlation across Ranked Samples
  ☆12Updated 2 years ago
• bioturing / signac
  An analytics package for single cell data
  ☆22Updated 3 years ago
• mm-shah / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆13Updated 6 years ago
• immunogenomics / singlecellmethods
  Collection of useful methods for single cell analysis
  ☆14Updated 9 months ago
• klarman-cell-observatory / scSVA
  Single-cell Scalable Visualization and Analytics
  ☆25Updated 6 years ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• kieranrcampbell / switchde
  Inference of switch-like differential expression along single-cell trajectories
  ☆20Updated 7 years ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆68Updated 3 weeks ago
• statOmics / zingeR
  zero-inflated negative binomial gene expression in R
  ☆20Updated 7 years ago
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆57Updated 8 months ago
• waldronlab / cBioPortalData
  Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
  ☆33Updated last month
• YosefLab / FastProject
  Dimensionality reduction for single cell RNA-seq data
  ☆35Updated 5 years ago
• statOmics / zinbwaveZinger
  Integrating zingeR with ZINB-WaVE weights
  ☆24Updated 7 years ago
• kdkorthauer / scDD
  R package to identify genes with differential distributions in single-cell RNA-seq
  ☆33Updated 3 years ago
• epurdom / clusterExperiment
  R package of techniques for comparing clusterings of single-cell sequencing data
  ☆38Updated last year
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago