Alternatives and similar repositories for LTFHPlus

Users that are interested in LTFHPlus are comparing it to the libraries listed below

• WenjianBI / SPACox
  GWAS for survival analysis in large cohorts
  ☆22Updated last year
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆19Updated 10 years ago
• ClaraAlbi / paper_multiPGS
  ☆10Updated 2 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆48Updated 2 years ago
• tobyjohnson / gtx
  Genetics ToolboX R package
  ☆32Updated 5 years ago
• yanglab-emory / TIGAR
  ☆22Updated 2 months ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆28Updated 3 years ago
• xihaoli / STAAR
  An R package for performing STAAR procedure in whole-genome sequencing studies
  ☆96Updated 10 months ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 6 months ago
• MRC-Epid / pGWAS_discovery
  Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
  ☆26Updated 4 years ago
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆38Updated last year
• clagiamba / moloc
  ☆37Updated 4 years ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated last month
• jrs95 / gassocplot2
  Regional association plots
  ☆24Updated last year
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆71Updated last week
• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆47Updated last week
• hakyimlab / gtex-gwas-analysis
  ☆24Updated 4 years ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆52Updated 9 months ago
• yaowuliu / ACAT
  ☆37Updated 4 years ago
• LaurenceHowe / SiblingGWAS
  Scripts for running a sibling GWAS
  ☆16Updated 3 years ago
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆31Updated last year
• omerwe / S-PCGC
  Heritability, genetic correlation and functional enrichment estimation for case-control studies
  ☆19Updated 2 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆35Updated 5 years ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• CBIIT / LDlinkR
  LDlinkR
  ☆62Updated last year
• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆76Updated last week
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆35Updated 5 months ago
• thewonlab / H-MAGMA
  ☆35Updated 2 years ago
• joepickrell / gwas-pw
  Pariwise analysis of GWAS
  ☆45Updated 7 years ago
• buutrg / PRSmix
  ☆20Updated 5 months ago