Alternatives and similar repositories for denovogui:

Users that are interested in denovogui are comparing it to the libraries listed below

• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆39Updated last year
• pFindStudio / pFind3
  ☆26Updated 2 months ago
• jessegmeyerlab / proteomics-tutorial
  ☆58Updated 10 months ago
• lkytal / PepNet
  The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra
  ☆35Updated 5 months ago
• nh2tran / DeepNovo-DIA
  De novo peptide sequencing for DDA and DIA by deep learning
  ☆32Updated 4 years ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆47Updated last week
• nf-core / metaboigniter
  Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
  ☆19Updated 2 months ago
• kentsisresearchgroup / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆26Updated 6 years ago
• Nesvilab / DIA-Umpire
  Computational analysis for mass spectrometry-based proteomics data
  ☆20Updated last year
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆41Updated this week
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆13Updated last month
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆51Updated 8 months ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆36Updated 3 months ago
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆33Updated this week
• dosorio / Peptides
  An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
  ☆83Updated last year
• PayneLab / ProteomicsEducation
  ☆29Updated 7 months ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 2 months ago
• pwilmart / PAW_pipeline
  A Comet-based, best practices proteomics pipeline.
  ☆36Updated last year
• cschlaffner / PoGo
  PoGo is a proteogenomic tool which allows mapping of peptides identified through mass spectrometry to a reference genome through provided…
  ☆11Updated 3 years ago
• nf-core / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆33Updated 10 months ago
• robinschmid / microbe_masst
  Using MASST or fastMASST, adding metadata onto a tree ontology for microbes
  ☆18Updated last week
• compomics / peptide-shaker
  Interpretation of proteomics identification results
  ☆48Updated 3 months ago
• mobiusklein / glycresoft
  An LC-MS/MS glycan and glycopeptide search engine
  ☆11Updated 2 months ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆38Updated this week
• computational-metabolomics / dimspy
  Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data
  ☆19Updated last year
• dnusinow / cRomppass
  Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence
  ☆10Updated 9 years ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆34Updated 3 weeks ago
• FredHutch / maxquant-pipeline
  MaxQuant Automated Pipeline
  ☆22Updated 4 years ago
• snijderlab / stitch
  Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling
  ☆22Updated 5 months ago
• MonashProteomics / FragPipe-Analyst
  ☆17Updated last week