Functional-Metabolomics-Lab / FBMN-STATSLinks
FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks
☆39Updated 2 months ago
Alternatives and similar repositories for FBMN-STATS
Users that are interested in FBMN-STATS are comparing it to the libraries listed below
Sorting:
- MS2Query - machine learning assisted library querying of MS/MS spectra☆46Updated 3 months ago
- Public Workflows at GNPS☆62Updated last year
- Metabolome Annotation Workflow☆25Updated last year
- asari, metabolomics data preprocessing☆51Updated 3 weeks ago
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆31Updated 2 years ago
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆47Updated 2 years ago
- Using MASST or fastMASST, adding metadata onto a tree ontology for microbes☆21Updated this week
- Deep learning framework for proteomics☆131Updated this week
- Bottom-up MS/MS interrogation & Experiment-specific global annotation☆29Updated 8 months ago
- Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data☆23Updated 6 months ago
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆54Updated last week
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆89Updated last year
- A collection of available Python tools for Proteomics analysis☆59Updated 6 years ago
- Python package for investigating the structural context of PTMs☆28Updated 7 months ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆41Updated last year
- Molecular formula discovery via bottom-up MS/MS interrogation☆14Updated 11 months ago
- ☆55Updated 4 years ago
- a python package for molecular formula analysis in MS-based small molecule studies☆30Updated last month
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆85Updated this week
- Democratizing ML in proteomics☆43Updated last week
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated 2 weeks ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆27Updated 7 months ago
- A list of tools on proteomics using deep learning☆103Updated last year
- Community-curated tutorials and datasets for ML in proteomics☆55Updated 4 months ago
- SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository…☆114Updated last week
- ☆64Updated last year
- ☆34Updated last month
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated last month
- R Package for Systematic Optimization of Metabolomic Data Processing☆17Updated 4 months ago
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆42Updated 2 years ago