bigbio / py-pgatkLinks
Python tools for proteogenomics analysis toolkit
☆13Updated last year
Alternatives and similar repositories for py-pgatk
Users that are interested in py-pgatk are comparing it to the libraries listed below
Sorting:
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆36Updated this week
- A guide to running MaxQuant in Linux☆33Updated 5 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆34Updated last year
- Integration ribosome profiling - mass spectrometry☆15Updated 3 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆42Updated 6 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆28Updated last year
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- Utilities for downloading and managing protein FASTA files.☆13Updated last year
- iCount, protein-RNA interaction analytics☆23Updated 3 years ago
- python scripts for proteogenomics analysis☆10Updated 5 years ago
- DEqMS is a tool for quantitative proteomic analysis☆23Updated 2 months ago
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆19Updated 5 months ago
- Absolute quantification package based on quantms.io☆14Updated last month
- ☆31Updated 4 years ago
- PepQuery: a targeted peptide search engine☆12Updated last year
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆39Updated 2 weeks ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- gatk4 RNA variant calling pipeline☆48Updated 3 weeks ago
- IPAW: a Nextflow workflow for proteogenomics☆28Updated 10 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 6 months ago
- R package for analysing proteomics data☆49Updated 2 years ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- ☆28Updated last month
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Updated 6 years ago
- A Python module to analyze Sanger sequencing results.☆24Updated last year
- visual analysis of your VCF files☆34Updated 2 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆54Updated 3 weeks ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 4 months ago