Alternatives and similar repositories for vrs-python

Users that are interested in vrs-python are comparing it to the libraries listed below

• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆88Updated 2 months ago
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆121Updated this week
• ga4gh / va-spec
  An information model for representing variant annotations.
  ☆18Updated last week
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆65Updated 2 months ago
• The-Sequence-Ontology / SO-Ontologies
  Collect of SO Ontologies
  ☆100Updated 6 months ago
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆79Updated last month
• imgag / megSAP
  a Medical Genetics Sequence Analysis Pipeline
  ☆83Updated last week
• charite / jannovar
  Annotation of VCF variants with functional impact and from databases (executable+library)
  ☆59Updated this week
• zwdzwd / transvar
  TransVar - multiway annotator for precision medicine
  ☆125Updated 2 years ago
• sbslee / pypgx
  A Python package for pharmacogenomics (PGx) research
  ☆73Updated 3 months ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆87Updated last week
• CCDG / Pipeline-Standardization
  ☆82Updated 6 years ago
• ohsu-comp-bio / g2p-aggregator
  Associations of genomic features, drugs and diseases
  ☆48Updated 2 years ago
• dnanexus-rnd / GLnexus
  Scalable gVCF merging and joint variant calling for population sequencing projects
  ☆158Updated last year
• imgag / ClinCNV
  Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
  ☆85Updated 4 months ago
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆84Updated 11 months ago
• broadinstitute / cromwell-tools
  A collection of Python clients and accessory scripts for interacting with the Cromwell
  ☆22Updated 2 years ago
• biothings / myvariant.info
  MyVariant.info: A BioThings API for human variant annotations
  ☆95Updated 2 weeks ago
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆114Updated 5 months ago
• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆31Updated last week
• broadinstitute / cromshell
  CLI for interacting with Cromwell servers
  ☆53Updated last year
• 4dn-dcic / tibanna
  Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…
  ☆69Updated last month
• hall-lab / svtools
  Tools for processing and analyzing structural variants.
  ☆151Updated 3 years ago
• 0xTCG / aldy
  Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
  ☆62Updated last month
• gatk-workflows / seq-format-conversion
  Workflows for converting between sequence data formats
  ☆38Updated 3 years ago
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆188Updated this week
• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆44Updated last year
• cbg-ethz / NGS-pipe
  NGS-pipe: next-generation sequencing pipelines for precision oncology
  ☆110Updated 6 years ago
• macarthur-lab / clinvar
  This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…
  ☆125Updated 5 years ago
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆49Updated 4 years ago