genome / analysis-workflowsLinks
Open workflow definitions for genomic analysis from MGI at WUSM.
☆104Updated 6 months ago
Alternatives and similar repositories for analysis-workflows
Users that are interested in analysis-workflows are comparing it to the libraries listed below
Sorting:
- ☆82Updated 7 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆57Updated 5 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆91Updated 4 months ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 4 months ago
- Documentation and description of AWS iGenomes S3 resource.☆120Updated last year
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 3 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Updated 5 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- Software program for checking sample matching for NGS data☆137Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- A collection of reusable WDL tasks. Category:Other☆88Updated last month
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆137Updated 3 years ago
- R package designed to simplify structural variant analysis☆74Updated 4 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- The Platinum Genomes Truthset☆89Updated 8 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Workflows for germline short variant discovery with GATK4☆139Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Updated 5 years ago
- WisecondorX — An evolved WISECONDOR☆109Updated last month
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- Documentation archive for GATK tools and workflows☆93Updated 6 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- VarDict Java port☆138Updated 2 years ago
- ☆57Updated 5 years ago
- NEAT read simulation tools☆101Updated 3 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆175Updated last year