genome / analysis-workflowsLinks
Open workflow definitions for genomic analysis from MGI at WUSM.
☆104Updated 4 months ago
Alternatives and similar repositories for analysis-workflows
Users that are interested in analysis-workflows are comparing it to the libraries listed below
Sorting:
- GATK RNA-Seq Variant Calling in Nextflow☆137Updated 2 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- ☆82Updated 6 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 months ago
- Software program for checking sample matching for NGS data☆136Updated last year
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆91Updated 2 months ago
- Documentation and description of AWS iGenomes S3 resource.☆117Updated 11 months ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 5 years ago
- VarDict Java port☆136Updated last year
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Reference data: BED files, genes, transcripts, variations.☆88Updated 7 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆56Updated 5 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆111Updated last year
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- Characterization of Germline variants☆98Updated 3 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Updated 5 years ago
- MOsaic CHromosomal Alterations (MoChA) caller☆88Updated 2 months ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆133Updated last year
- Relevant papers for CNV and SV approaches☆94Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- A collection of reusable WDL tasks. Category:Other☆88Updated 3 months ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆57Updated 4 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago