genome / analysis-workflows
Open workflow definitions for genomic analysis from MGI at WUSM.
☆104Updated 2 months ago
Alternatives and similar repositories for analysis-workflows:
Users that are interested in analysis-workflows are comparing it to the libraries listed below
- Finder of Somatic Fusion Genes in RNA-seq data☆145Updated 2 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆133Updated 2 years ago
- Documentation and description of AWS iGenomes S3 resource.☆113Updated 4 months ago
- Software program for checking sample matching for NGS data☆130Updated 10 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆157Updated 2 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆159Updated 8 months ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆85Updated 2 months ago
- VarDict☆198Updated last year
- microsatellite instability detection using tumor only or paired tumor-normal data☆129Updated 4 years ago
- Workflows for germline short variant discovery with GATK4☆134Updated 3 years ago
- A collection of reusable WDL tasks. Category:Other☆86Updated last week
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- Structural variation and indel detection by local assembly☆244Updated last month
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆142Updated this week
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆203Updated 4 years ago
- Copy number calling and variant classification using targeted short read sequencing☆134Updated this week
- A structural variation pipeline for short-read sequencing☆187Updated this week
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆150Updated last year
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated 11 months ago
- ABRA2☆92Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- WisecondorX — An evolved WISECONDOR☆97Updated 7 months ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆56Updated 4 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Relevant papers for CNV and SV approaches☆94Updated 5 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆268Updated last year