Open workflow definitions for genomic analysis from MGI at WUSM.
☆107Jun 23, 2025Updated last year
Alternatives and similar repositories for analysis-workflows
Users that are interested in analysis-workflows are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆58Mar 29, 2021Updated 5 years ago
- Core modules used by the GMS☆71Aug 13, 2026Updated 2 weeks ago
- Workflows for germline short variant discovery with GATK4☆145May 7, 2021Updated 5 years ago
- ☆51Jun 27, 2019Updated 7 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆29Jun 12, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆35Sep 28, 2020Updated 5 years ago
- ☆69Jun 21, 2022Updated 4 years ago
- A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline☆212May 28, 2023Updated 3 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆206Aug 23, 2026Updated last week
- Work supporting the comparison of SnpEff and VEP effect prediction and HGVS identifiers☆11Mar 15, 2017Updated 9 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Jun 11, 2026Updated 2 months ago
- Write CWL in R☆15May 9, 2024Updated 2 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- Tools for working with genomic and high throughput sequencing data.☆372Aug 20, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- ☆46Nov 18, 2019Updated 6 years ago
- PharmGKB NGS Pipeline☆19Oct 2, 2018Updated 7 years ago
- Overview of GDC Harmonization Workflows☆43May 5, 2026Updated 3 months ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Jul 30, 2020Updated 6 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆22Aug 18, 2020Updated 6 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 7 years ago
- CWL for GDC DNASeq workflows☆24Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- Concordance and contamination estimator for tumor–normal pairs☆60Oct 22, 2024Updated last year
- structure detection program☆18Nov 20, 2024Updated last year
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆81Mar 25, 2025Updated last year
- Personal Cancer Genome Reporter (PCGR)☆283Updated this week
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Jan 24, 2020Updated 6 years ago
- Strelka2 germline and somatic small variant caller☆394Apr 20, 2026Updated 4 months ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- Convert CWL to WDL☆17Oct 17, 2016Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- HGVS variant name parsing and generation☆177Jun 14, 2023Updated 3 years ago
- ASCAT R package☆204Feb 12, 2026Updated 6 months ago
- Create cwl workflows by writing a simple Python script☆39Apr 29, 2020Updated 6 years ago
- A collection of reusable WDL tasks. Category:Other☆89Updated this week
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Sep 17, 2023Updated 2 years ago
- Deprecated☆101Aug 12, 2019Updated 7 years ago
- BIC@MSKCC Variants Pipeline☆23Mar 28, 2023Updated 3 years ago