genome / analysis-workflowsLinks
Open workflow definitions for genomic analysis from MGI at WUSM.
☆104Updated 7 months ago
Alternatives and similar repositories for analysis-workflows
Users that are interested in analysis-workflows are comparing it to the libraries listed below
Sorting:
- ☆81Updated 7 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 4 months ago
- Documentation and description of AWS iGenomes S3 resource.☆120Updated last year
- VarDict Java port☆138Updated 2 years ago
- A collection of reusable WDL tasks. Category:Other☆88Updated last month
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆91Updated 4 months ago
- GATK RNA-Seq Variant Calling in Nextflow☆138Updated 3 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- Workflows for germline short variant discovery with GATK4☆139Updated 4 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 6 years ago
- Software program for checking sample matching for NGS data☆137Updated last year
- Script to automatically create and run IGV snapshot batchscripts☆142Updated 3 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Updated 6 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Updated 4 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆57Updated 5 years ago
- Workflows for converting between sequence data formats☆40Updated 4 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- Copy number calling and variant classification using targeted short read sequencing☆141Updated 5 months ago
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆57Updated 4 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆113Updated last year
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 8 years ago
- Documentation archive for GATK tools and workflows☆93Updated 6 years ago
- Relevant papers for CNV and SV approaches☆94Updated last year
- An efficient FASTQ manipulation suite☆138Updated 6 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- R package designed to simplify structural variant analysis☆74Updated 4 years ago