cmzmasek / archaeopteryx-jsLinks
Archaeopteryx.js is a software tool for the visualization and analysis of highly annotated phylogenetic trees.
☆42Updated 2 months ago
Alternatives and similar repositories for archaeopteryx-js
Users that are interested in archaeopteryx-js are comparing it to the libraries listed below
Sorting:
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆128Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆60Updated 6 years ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆94Updated 4 months ago
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆83Updated 7 years ago
- Visualization of the pan-genome output by panX☆64Updated 3 months ago
- viral-ngs: complete pipelines☆66Updated last month
- Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.☆71Updated this week
- An imagemagick-like frontend to Biopython SeqIO☆116Updated last year
- A Whole Genome Alignment Visualization Tool for the Web☆44Updated 2 years ago
- Antibiotic resistance prediction in minutes☆112Updated 10 months ago
- MEGAN Community Edition☆72Updated last year
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆83Updated 9 months ago
- SEER, reimplemented in python 🐍🔮☆124Updated 4 months ago
- Catalog of genomic indexes freely available from public clouds☆62Updated last month
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated last year
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆79Updated last week
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆68Updated 3 years ago
- Sample search by metadata and features☆47Updated 2 years ago
- Portable WDL workflows for CZ ID production pipelines☆47Updated 3 months ago
- Interactive visualization of assembly graphs☆83Updated 3 years ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆36Updated 6 years ago
- ☆131Updated last year
- Protein Alignment and Detection Interface☆60Updated last year
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆105Updated 4 months ago
- Reference-based consensus creation☆56Updated this week
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- A fast and scalable phylogenetic tree viewer for microbiome data analysis☆54Updated last year
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- Automated Sanger Analysis Pipeline (ASAP): a tool for rapidly analyzing Sanger sequencing data with minimum user interference.☆25Updated 7 months ago