cmzmasek / archaeopteryx-jsLinks
Archaeopteryx.js is a software tool for the visualization and analysis of highly annotated phylogenetic trees.
☆42Updated 3 months ago
Alternatives and similar repositories for archaeopteryx-js
Users that are interested in archaeopteryx-js are comparing it to the libraries listed below
Sorting:
- Visualization of the pan-genome output by panX☆64Updated 4 months ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆61Updated 6 years ago
- SEER, reimplemented in python 🐍🔮☆125Updated 4 months ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆68Updated 3 years ago
- de novo virus assembler of Illumina paired reads☆57Updated 4 years ago
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆79Updated this week
- Protein Alignment and Detection Interface☆60Updated last year
- A public repository for collective curation of antimicrobial resistance (AMR) genes and mutations. Submit, discuss, and resolve AMR curat…☆63Updated 3 weeks ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆128Updated last year
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆84Updated 7 years ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆124Updated last month
- A fast and scalable phylogenetic tree viewer for microbiome data analysis☆55Updated last year
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆94Updated 5 months ago
- viralVerify: viral contig verification tool☆72Updated 4 years ago
- Sample search by metadata and features☆47Updated 2 years ago
- Antibiotic resistance prediction in minutes☆112Updated 10 months ago
- PaperBLAST: find papers about a protein or its homologs☆46Updated last month
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- An imagemagick-like frontend to Biopython SeqIO☆116Updated last year
- viral-ngs: complete pipelines☆66Updated this week
- The Biological Observation Matrix (BIOM) Format Project☆95Updated last month
- Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.☆72Updated this week
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆97Updated last week
- Scalable creating/updating of metagenome profiling databases☆62Updated 3 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- ☆132Updated last year
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆36Updated 6 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆75Updated last year
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago