PathwayAndDataAnalysis / causalpath
A project for exploring differentially active signaling paths related to proteomics datasets
☆42Updated 3 weeks ago
Alternatives and similar repositories for causalpath
Users that are interested in causalpath are comparing it to the libraries listed below
Sorting:
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆61Updated 2 months ago
- ☆38Updated last year
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆47Updated 3 weeks ago
- This is the public repository for the EPIC tool.☆17Updated 2 years ago
- R package for functionally scoring phosphorylation sites☆19Updated 5 years ago
- A 3-Dimensional View of Human Metabolism and Disease☆27Updated 7 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Connectivity Map analysis in MATLAB☆45Updated 3 years ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆14Updated 3 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆59Updated last year
- bioinformatics plotting and tools☆56Updated 11 months ago
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- ☆43Updated 6 months ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆37Updated 5 years ago
- Python client for the OmniPath web service☆44Updated 2 months ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆65Updated last year
- R package for analysing proteomics data☆49Updated 2 years ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆31Updated last month
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆40Updated last month
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- Shiny app for making and annotating Volcano plots☆23Updated 8 months ago
- This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a n…☆31Updated 6 years ago
- A Python package for gene network analysis☆32Updated 2 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Prize-Collecting Steiner Forests for Interactomes☆59Updated 10 months ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆35Updated this week
- Signac☆25Updated 2 years ago
- Absolute quantification package based on quantms.io☆14Updated 3 months ago