A project for exploring differentially active signaling paths related to proteomics datasets
☆47Apr 2, 2026Updated 5 months ago
Alternatives and similar repositories for causalpath
Users that are interested in causalpath are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CLUMPS adapted to post-translational modifications.☆10May 22, 2025Updated last year
- Enhanced Chromatin Occupancy (EChO)☆13Jan 8, 2020Updated 6 years ago
- Absolute quantification package based on quantms.io☆16Updated this week
- Pathway visualization and analysis tool for Pathway Commons and other BioPAX data☆14May 25, 2022Updated 4 years ago
- ☆12Aug 30, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Mar 26, 2026Updated 5 months ago
- ☆18Aug 8, 2026Updated last month
- Create synthetic DIA LC-MS/MS for proteomics experiments☆19Mar 16, 2023Updated 3 years ago
- The BioPAX Object Model, API and utilities implemented in Java☆30Jul 4, 2024Updated 2 years ago
- Train word2vec on Pubmed data, compare 2 GO terms, compare 2 genes.☆12Apr 7, 2017Updated 9 years ago
- Toolkit for constructing, analyzing, and visualizing data-driven ontologies☆17Feb 10, 2023Updated 3 years ago
- ☆11Sep 7, 2023Updated 3 years ago
- structure detection program☆18Nov 20, 2024Updated last year
- A Python package for peptide sequence analysis built around ProForma 2.1 notation. Calculate masses, generate fragments, predict isotopic…☆20Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Genoppi: an open-source software for robust and standardized integration of proteomic and genetic data☆26May 15, 2024Updated 2 years ago
- ☆11May 27, 2024Updated 2 years ago
- A Comprehensive R Package For Analyzing Quantitative Phosphoproteomics Data☆13Nov 30, 2022Updated 3 years ago
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Mar 9, 2021Updated 5 years ago
- CausalTrail - a tool for performing causal reasoning using the do-calculus☆12Jun 9, 2021Updated 5 years ago
- This repository contains the stand-alone tool for MusiteDeep server☆36Dec 5, 2020Updated 5 years ago
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆13May 16, 2023Updated 3 years ago
- Stable diffusion google colab kernel☆11Aug 17, 2022Updated 4 years ago
- Release of the whole cell E. coli model.☆78Dec 10, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- a modified version of FunSeq2 using new data context☆15Aug 18, 2022Updated 4 years ago
- Update RCytoscape to work for Cytoscape 3.0 and higher using CyREST☆16Feb 3, 2018Updated 8 years ago
- Meteor+React+Antd tutorial step by step☆10Mar 2, 2017Updated 9 years ago
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- CATH: high-throughput protein structure/function annotations☆12Dec 17, 2019Updated 6 years ago
- DYNamics Agnostic Network MOdels☆18Jul 3, 2018Updated 8 years ago
- A Python package and command-line interface for extracting knowledge graphs from text, with a special focus on supporting agents working …☆23Jan 13, 2026Updated 8 months ago
- A simulation framework to analyze signal flows in complex networks☆15Jun 11, 2026Updated 3 months ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆12Mar 2, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Drugbank.ca xml file converted to a mysql database☆10Apr 28, 2015Updated 11 years ago
- State of the Unions for the rest of us☆19Jan 16, 2015Updated 11 years ago
- ☆16Jul 18, 2022Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 7 years ago
- Protein Graph in Python for MetaPath-ML and more.☆20Jun 20, 2025Updated last year
- NonEquilibrium Reaction-Diffusion Self-assembly Simulator☆14Feb 18, 2026Updated 7 months ago
- ☆12Mar 1, 2025Updated last year