chaolinzhanglab / DeltaSpliceLinks
A neural network model to predict splice site usage and splicing-altering mutations
☆15Updated last month
Alternatives and similar repositories for DeltaSplice
Users that are interested in DeltaSplice are comparing it to the libraries listed below
Sorting:
- ☆39Updated last month
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆54Updated 6 months ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆13Updated last month
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆26Updated 4 months ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated last month
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated 2 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆41Updated last year
- SingleCell Nanopore sequencing data analysis☆60Updated 3 months ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- ☆31Updated 8 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆30Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- ☆36Updated 2 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆25Updated last month
- Scoring GT/AG sites for improving spliced alignment☆45Updated last month
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- An R package to process and analyze transcriptomic data☆18Updated 2 months ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 6 months ago
- Saluki, a method to predict mRNA half-lives from sequence☆25Updated 2 years ago
- Blazing fast toolkit to work with .hic and .cool files☆38Updated this week
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆18Updated last month
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated last year
- Workflow for Sequenza, cellularity and ploidy☆20Updated last week
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- Useful tools for working with Salmon output☆38Updated 5 years ago