chaolinzhanglab / DeltaSpliceLinks
A neural network model to predict splice site usage and splicing-altering mutations
☆15Updated 4 months ago
Alternatives and similar repositories for DeltaSplice
Users that are interested in DeltaSplice are comparing it to the libraries listed below
Sorting:
- ☆39Updated 5 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆57Updated 9 months ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆13Updated 5 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆20Updated 4 months ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆35Updated 2 weeks ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 9 months ago
- SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.☆12Updated 2 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆42Updated last year
- SingleCell Nanopore sequencing data analysis☆62Updated 6 months ago
- Comprehensive and scalable differential splicing analyses☆17Updated last month
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated 2 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆39Updated last month
- Saluki, a method to predict mRNA half-lives from sequence☆27Updated 3 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- Workflow for Sequenza, cellularity and ploidy☆25Updated 3 months ago
- ☆13Updated 3 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Updated 2 years ago
- ☆23Updated 4 months ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 8 months ago
- ☆31Updated last year
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆31Updated 2 weeks ago
- ☆15Updated 3 years ago
- An R package to process and analyze transcriptomic data☆18Updated 5 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated 3 weeks ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated 2 years ago