☆16Apr 9, 2026Updated 6 months ago
Alternatives and similar repositories for SpatialCellChat
Users that are interested in SpatialCellChat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Spatial neighbour-aware transcript cleanup for imaging-based spatial transcriptomics data (Xenium, MERSCOPE, CosMx). XeniumClean removes…☆21Jul 19, 2026Updated 3 months ago
- RIPPLE - Spatial transcriptomics analysis of a cell's influence on its neighbors' transcriptome☆41Sep 14, 2026Updated last month
- Spatial Omics Structure Analysis (sosta)☆10Sep 18, 2026Updated last month
- ☆14Jul 1, 2025Updated last year
- ☆36Jun 15, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆38Jan 3, 2025Updated last year
- A repository of case studies using ProjecTILs☆16Jul 26, 2024Updated 2 years ago
- A classifier for tumor microenvironment subtype based on ensemble machine learning models☆11Jul 20, 2025Updated last year
- Weighted gene co-expression network analysis for scRNA-seq data in Seurat☆10Dec 15, 2023Updated 2 years ago
- ☆11Jul 8, 2024Updated 2 years ago
- ☆14Aug 18, 2026Updated 2 months ago
- ☆10Sep 2, 2024Updated 2 years ago
- ☆18Jun 24, 2026Updated 4 months ago
- Pan-cancer human brain metastases atlas at single-cell resolution☆24Apr 3, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated 2 years ago
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆19Sep 25, 2026Updated last month
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆56Oct 31, 2024Updated last year
- NeuroVelo: physics-based interpretable learning of cellular dynamics☆10Jan 24, 2026Updated 9 months ago
- ☆36May 27, 2026Updated 4 months ago
- Functions to analyze copy number aberrations in single-cell data☆13Feb 3, 2025Updated last year
- ☆15Nov 2, 2017Updated 8 years ago
- Segmentation-free Analysis of In Situ Capture data☆15Oct 7, 2026Updated 2 weeks ago
- Modern ggplot2 visualizations for GWAS summary statistics☆37Oct 15, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆52Feb 16, 2022Updated 4 years ago
- analysis script for GBM single cell RNA seq data☆22May 26, 2021Updated 5 years ago
- ☆24Jan 10, 2025Updated last year
- ☆26Feb 9, 2025Updated last year
- ☆12Updated this week
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆14Oct 17, 2024Updated 2 years ago
- Deciphering spatial ecotypes from spatial, single-cell, and bulk transcriptomic data☆50Sep 25, 2026Updated last month
- Cell clustering and communication network inference for single-cell transcriptomics☆14Sep 18, 2024Updated 2 years ago
- ☆15Jul 11, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Highly accurate prediction of single-cell spatial transcriptomics from histology images☆37Oct 18, 2026Updated last week
- Repository for the clone2vec python package☆26Sep 8, 2026Updated last month
- single-cell clustering based on alternative splicing landscapes☆23Mar 20, 2024Updated 2 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆92Mar 19, 2026Updated 7 months ago
- ☆29Jun 4, 2023Updated 3 years ago
- ☆37Oct 12, 2026Updated 2 weeks ago
- DECIPHER for learning high-fidelity disentangled embeddings from spatial omics data☆26Jan 20, 2026Updated 9 months ago