Alternatives and similar repositories for corneto:

Users that are interested in corneto are comparing it to the libraries listed below

• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆22Updated 5 months ago
• flatironinstitute / inferelator
  Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.
  ☆48Updated 9 months ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆47Updated 2 weeks ago
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆58Updated last week
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆80Updated 5 months ago
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆24Updated 3 months ago
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆64Updated last month
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆44Updated 5 months ago
• lilab-bcb / harmony-pytorch
  ☆51Updated last week
• saketkc / pySCTransform
  Python package to perform normalization and variance-stabilization of single-cell data
  ☆23Updated last week
• cellatlas / human
  ☆42Updated 5 months ago
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆23Updated 3 weeks ago
• saezlab / omnipath
  Python client for the OmniPath web service
  ☆44Updated last month
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆61Updated 11 months ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆46Updated 2 months ago
• lcmmichielsen / scHPL
  ☆35Updated last month
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 2 years ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆59Updated 10 months ago
• bioFAM / mofax
  Work with trained factor models in Python
  ☆31Updated 5 months ago
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆52Updated 7 months ago
• settylab / Mellon
  Non-parametric density inference for single-cell analysis.
  ☆68Updated last month
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated last month
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆39Updated this week
• theislab / prophet
  ☆30Updated last week
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated last year
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆31Updated last week
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆71Updated 3 months ago
• saezlab / mistyR
  Multiview Intercellular SpaTial modeling framework
  ☆52Updated last year
• noamteyssier / adpbulk
  pseudobulking on an AnnData object
  ☆29Updated 3 weeks ago
• vitkl / orthologsBioMART
  One-liner for mapping orthologous genes in both R and python using ENSEMBL BioMART
  ☆22Updated 3 years ago