Alternatives and similar repositories for corneto

Users that are interested in corneto are comparing it to the libraries listed below

• saezlab / omnipath
  Python client for the OmniPath web service
  ☆53Updated 4 months ago
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆113Updated last week
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆98Updated 2 weeks ago
• lilab-bcb / harmony-pytorch
  ☆56Updated 5 months ago
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆50Updated last week
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆54Updated 3 weeks ago
• epigen / CellWhisperer
  CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
  ☆116Updated this week
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆56Updated last week
• flatironinstitute / inferelator
  Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.
  ☆54Updated last year
• noamteyssier / adpbulk
  pseudobulking on an AnnData object
  ☆34Updated 8 months ago
• bedapub / besca
  BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis
  ☆50Updated 5 months ago
• Teichlab / bbknn
  Batch balanced KNN
  ☆174Updated 2 years ago
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆122Updated last month
• mossjacob / pyslingshot
  Python implementation of the Slingshot pseudotime algorithm
  ☆66Updated 2 weeks ago
• bioFAM / mofax
  Work with trained factor models in Python
  ☆35Updated last year
• vitkl / orthologsBioMART
  One-liner for mapping orthologous genes in both R and python using ENSEMBL BioMART
  ☆24Updated 4 years ago
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆56Updated last week
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆55Updated 5 months ago
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆59Updated last year
• stefanpeidli / mousipy
  Translates an AnnData object with mouse gene symbols into one with human gene symbols by mapping orthologs from biomart.
  ☆28Updated 5 months ago
• settylab / Mellon
  Non-parametric density inference for single-cell analysis.
  ☆72Updated 5 months ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆93Updated last year
• rajewsky-lab / spacemake
  ☆45Updated last week
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆67Updated last week
• aertslab / arboreto
  A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
  ☆61Updated last year
• scverse / decoupler
  Python package to perform enrichment analysis from omics data.
  ☆238Updated this week
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆59Updated 3 weeks ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆71Updated 2 years ago
• parashardhapola / scarf
  Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…
  ☆108Updated last week
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆107Updated last month