cancersysbio / pan-metastasisLinks
☆10Updated 5 years ago
Alternatives and similar repositories for pan-metastasis
Users that are interested in pan-metastasis are comparing it to the libraries listed below
Sorting:
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆20Updated 4 months ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 4 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Updated 3 years ago
- Implementation of FACETS for Terra☆12Updated 2 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 6 months ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated last month
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Easy Copy Number !☆21Updated this week
- TRUST4 manuscript evaluation☆15Updated 3 years ago
- ☆11Updated 2 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 5 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated this week
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Updated 6 months ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- ☆11Updated 6 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- ☆12Updated last month
- ☆22Updated 5 months ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- MicrOSAtellite Instability Classifier☆15Updated 7 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- ☆13Updated last month
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated last month