broadinstitute / scalable_analytics
Public collaboration of Scalable Single Cell Analytics
☆12Updated 7 years ago
Alternatives and similar repositories for scalable_analytics:
Users that are interested in scalable_analytics are comparing it to the libraries listed below
- Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.☆54Updated 5 years ago
- Ready-to-go Parquet-formatted public 'omics datasets☆30Updated 9 years ago
- Examples of using CloudML with genomic data.☆18Updated 5 years ago
- Parallel Genomic Analysis Toolkit☆14Updated 6 years ago
- GCP Variant Transforms☆138Updated 2 years ago
- VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information☆33Updated 7 years ago
- ☆9Updated 7 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 6 years ago
- Use cloud technology to annotate human sequence variants in parallel.☆11Updated 3 years ago
- Advanced BigQuery examples on genomic data.☆89Updated 7 years ago
- Scripts for working with Google Cloud Dataproc service☆37Updated 5 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- A scalable genome browser. Apache 2 licensed.☆125Updated 2 years ago
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 5 years ago
- Examples for the Google Genomics Pipelines API.☆50Updated 7 years ago
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆16Updated last year
- Finding a scalable alternative to the VCF File for genomics analysis☆14Updated 8 years ago
- Examples of how to get started with genomics data in BigQuery in many languages.☆53Updated 7 years ago
- Impute to 1000 genomes efficiently by distributing to SGE, including alignment of target to reference, haplotyping, imputing, converting …☆14Updated 10 years ago
- Example Cloud Datalab iPython Notebooks for genomics use cases.☆25Updated 7 years ago
- ☆11Updated 2 years ago
- Interactive visualizations for differential expression☆25Updated 2 years ago
- requirements, examples, and tests for expression matrix file formats☆22Updated 6 years ago
- Quality control methods for human genomic variants.☆62Updated 2 years ago
- Python utilities for BigQuery analyses.☆15Updated 4 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Updated 6 years ago
- Deprecated - this repository is an outdated fork from datacarpentry/cloud-genomics☆9Updated 7 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆22Updated 2 years ago