Alternatives and similar repositories for scalable_analytics

Users that are interested in scalable_analytics are comparing it to the libraries listed below

• isb-cgc / examples-Python
  Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.
  ☆54Updated 6 years ago
• googlegenomics / gcp-variant-transforms
  GCP Variant Transforms
  ☆141Updated 3 months ago
• googlegenomics / cloudml-examples
  Examples of using CloudML with genomic data.
  ☆18Updated 6 years ago
• bigdatagenomics / mango
  A scalable genome browser. Apache 2 licensed.
  ☆126Updated 2 years ago
• googlegenomics / bigquery-examples
  Advanced BigQuery examples on genomic data.
  ☆88Updated 8 years ago
• bigdatagenomics / eggo
  Ready-to-go Parquet-formatted public 'omics datasets
  ☆30Updated 9 years ago
• hammerlab / pageant
  Parallel Genomic Analysis Toolkit
  ☆14Updated 6 years ago
• BauerLab / VariantSpark
  VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information
  ☆33Updated 8 years ago
• bigdatagenomics / avocado
  A Variant Caller, Distributed. Apache 2 licensed.
  ☆71Updated 6 years ago
• googlegenomics / variant-annotation
  Use cloud technology to annotate human sequence variants in parallel.
  ☆11Updated 4 years ago
• googlegenomics / readthedocs
  Documentation for the Google Genomics cookbook.
  ☆141Updated 5 years ago
• hammerlab / guacamole
  Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly
  ☆85Updated 7 years ago
• DataBiosphere / dsub
  Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.
  ☆276Updated last month
• verilylifesciences / variant-qc
  Quality control methods for human genomic variants.
  ☆62Updated 3 years ago
• googlegenomics / datalab-examples
  Example Cloud Datalab iPython Notebooks for genomics use cases.
  ☆25Updated 8 years ago
• med-at-scale / high-health
  Integrate the GA4GH schemas and probably a scala impl of the service.
  ☆14Updated 9 years ago
• Mizzou-CBMI / COSMOS2
  Python Scientific Pipeline Management System
  ☆71Updated 2 years ago
• googlegenomics / pipelines-api-examples
  Examples for the Google Genomics Pipelines API.
  ☆50Updated 7 years ago
• HadoopGenomics / Hadoop-BAM
  Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework
  ☆72Updated 2 years ago
• ga4gh / ga4gh-schemas
  Models and APIs for Genomic data. RETIRED 2018-01-24
  ☆219Updated 2 years ago
• ga4gh / workflow-execution-service-schemas
  The WES API is a standard way to run and manage portable workflows.
  ☆85Updated last month
• Intel-HLS / GenomicsDB
  GenomicsDB
  ☆110Updated 2 years ago
• refinery-platform / heatmap-scatter-dash
  Interactive visualizations for differential expression
  ☆25Updated 2 years ago
• aehrc / VariantSpark
  machine learning for genomic variants
  ☆146Updated last week
• ga4gh / ga4gh-server
  Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
  ☆98Updated 7 years ago
• iobio / minion
  Server wrapper that turns command line tools into web services
  ☆60Updated 7 years ago
• YeoLab / flotilla
  Reproducible machine learning analysis of gene expression and alternative splicing data
  ☆126Updated 2 years ago
• idekerlab / cyREST
  DEPRECATED. Please visit our new repository (cytoscape/cyREST)
  ☆27Updated 8 years ago
• ga4gh-beacon / specification
  GA4GH Beacon specification.
  ☆32Updated 2 years ago
• Barski-lab / cwl-airflow
  Python package to extend Airflow functionality with CWL1.1 support
  ☆191Updated last year