PeeperLab / RtoolboxLinks
Toolbox with R scripts
☆38Updated 7 years ago
Alternatives and similar repositories for Rtoolbox
Users that are interested in Rtoolbox are comparing it to the libraries listed below
Sorting:
- scDataviz: single cell dataviz and downstream analyses☆63Updated 4 years ago
- Identify and correct invalid gene symbols☆59Updated 11 months ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- R package to visualize scRNA sequencing data.☆20Updated 3 years ago
- ☆10Updated 7 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆107Updated 2 years ago
- R package of colors for the Buenrostro Lab☆84Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 2 years ago
- ☆55Updated 4 years ago
- collection of notebooks with different cytoscape workflows☆50Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 7 months ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Clone of the Bioconductor repository for the scater package.☆97Updated 7 months ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆98Updated last year
- Clone of the Bioconductor repository for the DropletUtils package.☆62Updated last month
- An R toolkit for estimation of cell composition from bulk expression data☆79Updated 4 months ago
- R/Bioconductor package for working with 10x scATACseq data☆42Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- Tutorial for AMSI BioInfoSummer 2018☆30Updated 6 years ago
- A General Framework for Consensus Partitioning☆63Updated 8 months ago
- Normalize CITEseq Data☆66Updated 6 months ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆24Updated 3 months ago
- An R interface to enrichR☆93Updated 8 months ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆54Updated 2 months ago
- Reference transcriptome indices build from kallisto for popular organisms☆44Updated last year
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago