browning-lab / ibd-ends
The ibd-ends program performs probabilistic estimation of identity-by-descent segment endpoints.
☆10Updated 2 years ago
Alternatives and similar repositories for ibd-ends:
Users that are interested in ibd-ends are comparing it to the libraries listed below
- FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the a…☆14Updated 3 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆14Updated 2 years ago
- Ascertained Sequentially Markovian Coalescent☆15Updated 3 months ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Convert HAL to VG☆21Updated 6 months ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆13Updated 2 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- ☆26Updated 3 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 3 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆25Updated 2 months ago
- ☆16Updated 3 years ago
- R-package: Calculation of haplotype blocks and libraries☆30Updated 11 months ago
- ☆28Updated last year
- Genome-wide scan for balancing selection using beta statistic☆28Updated last year
- Population-wide Deletion Calling☆35Updated 5 months ago
- Two locus likelihoods and ARGs under changing population size☆13Updated 3 years ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆17Updated 2 years ago
- Genealogical Estimation of Variant Age (GEVA)☆27Updated 3 years ago
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- Tools to convert to and from vcf format☆14Updated 7 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- ☆15Updated 4 years ago
- Software package for estimating fine-scale recombination rate.☆13Updated 3 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆15Updated 10 months ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆20Updated last year