browning-lab / ibd-ends
The ibd-ends program performs probabilistic estimation of identity-by-descent segment endpoints.
☆10Updated 2 years ago
Alternatives and similar repositories for ibd-ends
Users that are interested in ibd-ends are comparing it to the libraries listed below
Sorting:
- FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the a…☆14Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Population genetics analysis on VG☆17Updated 4 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆15Updated 2 years ago
- ☆28Updated last month
- Convert HAL to VG☆22Updated 9 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- GRAph-based Finding of Individual Motif Occurrences☆31Updated 8 months ago
- Population-wide Deletion Calling☆35Updated last month
- Structural variant (SV) analysis tools☆36Updated 10 months ago
- Ascertained Sequentially Markovian Coalescent☆16Updated 5 months ago
- ☆26Updated 3 years ago
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- ☆14Updated last year
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Updated 6 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Updated 8 months ago
- faster haplotype-based admixture inference and dating software☆9Updated 3 years ago
- ☆9Updated last year
- ☆12Updated 3 weeks ago
- Recommended Graphtyper pipelines☆14Updated 4 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆13Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Updated 6 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆26Updated 5 months ago
- ☆16Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year