browning-lab / ibd-ends
The ibd-ends program performs probabilistic estimation of identity-by-descent segment endpoints.
☆10Updated 2 years ago
Alternatives and similar repositories for ibd-ends:
Users that are interested in ibd-ends are comparing it to the libraries listed below
- FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the a…☆14Updated 3 years ago
- Ascertained Sequentially Markovian Coalescent☆15Updated last month
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆14Updated 2 years ago
- Convert HAL to VG☆21Updated 5 months ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated last year
- Population-wide Deletion Calling☆35Updated 4 months ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 2 years ago
- Population genetics analysis on VG☆16Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Updated last year
- ☆26Updated 3 years ago
- Sweep Inference Framework (controlling for correlation)☆29Updated 6 months ago
- ☆28Updated last year
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- Hitting associations with k-mers☆46Updated 2 years ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆13Updated 2 years ago
- Evaluation of phasing performance☆22Updated 6 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆15Updated 6 years ago
- Structural variant (SV) analysis tools☆35Updated 6 months ago
- Two locus likelihoods and ARGs under changing population size☆13Updated 3 years ago
- Sample Contamination Estimate from VCF☆19Updated 2 months ago
- Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)☆41Updated last year
- ☆9Updated 10 months ago
- R-package: Calculation of haplotype blocks and libraries☆30Updated 10 months ago
- Pan gGnome Viewer☆10Updated 11 months ago
- ☆13Updated last year
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆15Updated 9 months ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆24Updated last month