bratmanlab / cfMeDIP_ProtocolLinks
☆9Updated 6 years ago
Alternatives and similar repositories for cfMeDIP_Protocol
Users that are interested in cfMeDIP_Protocol are comparing it to the libraries listed below
Sorting:
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆20Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- ☆33Updated 7 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- documentation for trackViewer☆29Updated 5 years ago
- An R for fast and flexible DNA methylation analysis☆31Updated last week
- Analysis of single-cell ChIP-seq datasets : From count matrices to differential analysis☆20Updated 5 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- Single Cell Analysis Automated Workflow☆27Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 9 months ago
- ATAC-seq lab for BIOINF545☆24Updated 5 months ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Updated last month
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 3 weeks ago
- RNA-seq Quantification of Alternative Polyadenylation☆47Updated last week
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆28Updated 9 years ago
- Scripts to recreate figures from the SC3 paper☆40Updated 8 years ago
- ChIP-seq DC and QC Pipeline☆35Updated 4 years ago
- ☆44Updated 6 years ago