Alternatives and similar repositories for RaptorX-Single

Users that are interested in RaptorX-Single are comparing it to the libraries listed below

• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆42Updated 6 months ago
• BioComputingUP / ring-pymol
  This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua
  ☆30Updated 2 months ago
• teevee112 / NetSolP-1.0
  Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language models
  ☆41Updated 11 months ago
• jsunn-y / CARE
  CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes
  ☆37Updated 5 months ago
• Furman-Lab / PatchMAN
  ☆27Updated last month
• kiharalab / NuFold
  NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation
  ☆47Updated last month
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆45Updated last year
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆47Updated 7 months ago
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆36Updated 3 weeks ago
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆37Updated 2 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆82Updated 4 months ago
• molML / peptidy
  The official codebase of peptidy, a peptide processing tool for machine learning.
  ☆36Updated 7 months ago
• hesther / enzymemap
  Python package to atom map, correct and suggest enzymatic reactions
  ☆39Updated last year
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆70Updated last year
• KosinskiLab / alphafold3x
  Explicit crosslinks in AlphaFold 3
  ☆23Updated 8 months ago
• Kuhlman-Lab / evopro
  ☆92Updated last month
• silicogenesis / protkit
  A Unified Approach to Protein Engineering
  ☆42Updated last year
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆49Updated 2 months ago
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆31Updated last year
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆73Updated last month
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆41Updated 7 months ago
• JieDuTQS / PPDOCK
  ☆22Updated 7 months ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆34Updated 2 years ago
• Nucleus2014 / protease-gcnn-pytorch
  ☆21Updated 2 years ago
• SLx64 / af3cli
  A command-line interface and Python library for generating AlphaFold3 input files.
  ☆37Updated 5 months ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆40Updated last year
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆48Updated last month
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆34Updated 7 years ago
• guyuehuo / opendock
  ☆51Updated 11 months ago
• cytokineking / FreeBindCraft
  BindCraft modified to make PyRosetta use and installation optional: no license needed
  ☆100Updated 2 months ago