Alternatives and similar repositories for PhyloHerb:

Users that are interested in PhyloHerb are comparing it to the libraries listed below

• blackrim / treePL
  Phylogenetic penalized likelihood
  ☆47Updated 8 months ago
• bcbc-group / Botany2020NMGWorkshop
  A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop
  ☆15Updated 4 years ago
• jasonleebrown / UCE_phyluce_pipeline
  UCE Bioinformatics Pipeline
  ☆15Updated 4 months ago
• GuillemSalazar / EcolUtils
  Utilities for community ecology analysis
  ☆18Updated 4 years ago
• macroevolution / bamm
  A program for multimodel inference on speciation and trait evolution
  ☆33Updated 7 years ago
• ranwez / MACSE_V2_PIPELINES
  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…
  ☆34Updated last year
• mahsa-mousavi / eDNAFlow
  ☆20Updated 2 years ago
• nstenz / TICR
  ☆26Updated 3 years ago
• Capblancq / RDA-landscape-genomics
  ☆30Updated 3 years ago
• LarsNauheimer / HybPhaser
  Workflow to detect and phase hybrids in target capture data
  ☆18Updated 2 years ago
• VascoElbrecht / JAMP
  JAMP - Just Another Metabarcoding Pipeline
  ☆34Updated 3 years ago
• FePhyFoFum / PyPHLAWD
  Python version of PHLAWD
  ☆21Updated 5 months ago
• sculab / RASP
  Reconstruct Ancestral State in Phylogenies
  ☆20Updated 10 months ago
• metabaRfactory / metabaR
  metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
  ☆14Updated 2 months ago
• stevemussmann / BayesAss3-SNPs
  Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
  ☆15Updated 3 years ago
• yoann-dufresne / SLIM
  A web app for environmental DNA metabarcoding analysis
  ☆10Updated 3 years ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆35Updated last year
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆40Updated 6 months ago
• mossmatters / phyloscripts
  Helper scripts for processing and visualization of phylogenetics datasets
  ☆28Updated last year
• TillMacher / TaxonTableTools
  TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data
  ☆22Updated 2 years ago
• brendanf / FUNGuildR
  Look Up Guild Information for Fungi in R
  ☆21Updated 2 weeks ago
• ifremer-bioinformatics / samba
  Standardized and Automated MetaBarcoding Analyses workflow (Mirror)
  ☆12Updated last year
• HullUni-bioinformatics / metaBEAT
  Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool
  ☆19Updated 5 years ago
• sjoleary / SNPFILT
  ☆18Updated 7 years ago
• aomlomics / mitohelper
  Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies
  ☆19Updated 2 weeks ago
• thierrygosselin / assigner
  Population assignment analysis using R
  ☆17Updated 4 months ago
• Yale-EEB723 / syllabus
  ☆22Updated 5 years ago
• gehara / PipeMaster
  An R Package to build and simulate coalescent models
  ☆20Updated 11 months ago
• simon-ho / SydneyPhyloWorkshop
  Sydney Phylogenetics Workshop
  ☆63Updated 2 months ago
• edgardomortiz / Captus
  Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
  ☆24Updated this week