lmcai / PhyloHerbLinks
PHYLOgenomic analysis pipeline for HERBarium specimens
☆17Updated 6 months ago
Alternatives and similar repositories for PhyloHerb
Users that are interested in PhyloHerb are comparing it to the libraries listed below
Sorting:
- Phylogenetic penalized likelihood☆54Updated 4 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop☆15Updated 5 years ago
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆23Updated 4 months ago
- UCE Bioinformatics Pipeline☆17Updated last month
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆35Updated 2 years ago
- Sydney Phylogenetics Workshop☆67Updated 4 months ago
- ☆21Updated 2 years ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆44Updated last year
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- Using ggtree to build phylogenetic trees☆50Updated last year
- Helper scripts for processing and visualization of phylogenetics datasets☆30Updated last year
- Various functions for analysis of microbial community data☆47Updated last month
- Utilities for community ecology analysis☆19Updated 5 years ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆33Updated 2 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated this week
- creating reference databases for amplicon sequencing☆41Updated 2 weeks ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆69Updated 4 years ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆23Updated 2 years ago
- R package and web app for spatial visualisation of admixture on a projected map☆45Updated 7 months ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆68Updated 3 weeks ago
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆32Updated 3 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆92Updated 3 months ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆18Updated 2 years ago
- Genome wide orthology inference and dNdS estimation☆96Updated 2 months ago
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Updated 3 years ago