bittremieux-lab / denovo_benchmarksLinks
☆17Updated last week
Alternatives and similar repositories for denovo_benchmarks
Users that are interested in denovo_benchmarks are comparing it to the libraries listed below
Sorting:
- Post-processing peptide de novo sequences to improve their accuracy☆10Updated 2 years ago
- Paper collection about de novo peptide Sequening☆19Updated 8 months ago
- Predict the structure of immune receptor proteins☆56Updated 11 months ago
- Proteomics Mass Spectrometry Datasets for Machine Learning☆19Updated last year
- ☆43Updated 3 weeks ago
- ☆15Updated 2 years ago
- [Bioinformatics 2025] Official implementation of the paper "ParaSurf: A Surface-Based Deep Learning Approach for Paratope-Antigen Interac…☆24Updated last week
- Fast deep learning methods for large-scale protein-protein interaction screening☆82Updated 2 months ago
- Code for generating model and predictions for CAFA5 competition 2023 (4th place solution)☆14Updated last year
- Insights into the inner workings of transformer models for protein function prediction☆14Updated last year
- PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)☆20Updated 2 years ago
- AutoML system for building trustworthy peptide bioactivity predictors☆34Updated 2 weeks ago
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆31Updated 2 years ago
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)☆58Updated 6 months ago
- Contrastive learning harmonizing protein language models and natural language models☆36Updated last year
- Results and data from the pilot round of the Protein Engineering Tournament☆30Updated 6 months ago
- Interactive Python notebooks for PDBe API training☆57Updated 3 weeks ago
- Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model☆34Updated 5 months ago
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆63Updated last month
- Collisional cross-section prediction for modified and multiconformational peptides☆13Updated 2 months ago
- Machine learning-driven antibody design☆60Updated 2 years ago
- Protein language model trained on coding DNA☆51Updated 11 months ago
- A software package for computing features of peptides and proteins☆64Updated last year
- Template-based protein design with Raygun☆74Updated last week
- ☆14Updated last year
- Graph Network for protein-protein interface including language model features☆32Updated last year
- ☆68Updated 11 months ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆61Updated 7 months ago
- PepFun 2.0: improved protocols for the analysis of natural and modified peptides☆25Updated 2 years ago
- ☆15Updated 8 months ago