Local Interaction Score (LIS) for structure prediction analysis
☆84Jul 28, 2026Updated 2 weeks ago
Alternatives and similar repositories for AFM-LIS
Users that are interested in AFM-LIS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆257Jan 3, 2026Updated 7 months ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 3 years ago
- PLM-interact: extending protein language models to predict protein-protein interactions.☆72Aug 29, 2025Updated 11 months ago
- LIVIA (Local Interaction VIsualization and Analysis) — Analyze and visualize protein interaction interfaces from structure predictions. B…☆24Updated this week
- Fast deep learning methods for large-scale protein-protein interaction screening☆133Aug 3, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Toolkit for alphafold3 input and output files☆106Jul 31, 2026Updated last week
- ☆148May 18, 2026Updated 2 months ago
- ☆59Jul 15, 2026Updated 3 weeks ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- ☆13May 24, 2026Updated 2 months ago
- ☆81Jun 10, 2026Updated 2 months ago
- ☆16Mar 19, 2026Updated 4 months ago
- Quantitative Estimate Index for Early-Stage Screening of Compounds Targeting Protein-Protein Interactions☆20Nov 28, 2023Updated 2 years ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆83May 1, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Identifying peptide-receptor interactions using AlphaFold-Multimer☆28Sep 12, 2023Updated 2 years ago
- ☆176Jul 24, 2026Updated 2 weeks ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆167Mar 28, 2026Updated 4 months ago
- HBDesigner is an algorithm that designs highly-connected hydrogen bonding networks that fit the requested design constraints onto an inpu…☆17Updated this week
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆190Oct 7, 2025Updated 10 months ago
- Metrics for our protein design competitions.☆36Nov 1, 2024Updated last year
- In silico directed evolution of peptide binders with AlphaFold☆274Apr 24, 2026Updated 3 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆131Oct 30, 2025Updated 9 months ago
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆99Jul 24, 2026Updated 2 weeks ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Sep 10, 2024Updated last year
- Neural Iterative Selection-Expansion using LigandMPNN/LASErMPNN and Boltz-2x☆64Jul 14, 2026Updated 3 weeks ago
- AI-powered macromolecular refinement☆48Apr 26, 2026Updated 3 months ago
- Screen interactions with AlphaFold Multimer☆14Mar 10, 2025Updated last year
- ☆86May 18, 2026Updated 2 months ago
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆54Jun 22, 2026Updated last month
- Calculation of interatomic interactions in molecular structures☆139Sep 3, 2024Updated last year
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆97Jul 31, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆258Feb 12, 2026Updated 6 months ago
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆104Jun 9, 2025Updated last year
- All-atom inverse protein folding through discrete flow matching (ICML2025)☆42Mar 22, 2026Updated 4 months ago
- ☆94Nov 25, 2025Updated 8 months ago
- Making Protein Design accessible to all via Google Colab!☆926Apr 6, 2026Updated 4 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Apr 13, 2026Updated 3 months ago
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆18May 15, 2026Updated 2 months ago