Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer). Visit FlyPredictome for large-scale AFM prediction results in fly (now ~800,000 PPIs).
☆65Oct 31, 2025Updated 4 months ago
Alternatives and similar repositories for AFM-LIS
Users that are interested in AFM-LIS are comparing it to the libraries listed below
Sorting:
- Protein Structure Analysis☆64Sep 30, 2025Updated 5 months ago
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Oct 25, 2021Updated 4 years ago
- ☆13Dec 5, 2024Updated last year
- ☆55Mar 12, 2026Updated last week
- In silico directed evolution of peptide binders with AlphaFold☆264Jan 5, 2026Updated 2 months ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 2 years ago
- Converts AlphaFold distograms into distance matrices and saves them into a number of formats☆15Dec 13, 2022Updated 3 years ago
- Metrics for our protein design competitions.☆34Nov 1, 2024Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆122Aug 3, 2025Updated 7 months ago
- ☆15Mar 28, 2025Updated 11 months ago
- Screen interactions with AlphaFold Multimer☆14Mar 10, 2025Updated last year
- ☆15Sep 29, 2025Updated 5 months ago
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆98Jun 9, 2025Updated 9 months ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆177Oct 7, 2025Updated 5 months ago
- Baseline model for PPB-Affinity benchmark data☆36May 21, 2025Updated 10 months ago
- ☆96Oct 14, 2025Updated 5 months ago
- What exactly are the non-canonical amino acids in the Rosetta database folder?☆12Feb 16, 2020Updated 6 years ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- Identifying peptide-receptor interactions using AlphaFold-Multimer☆28Sep 12, 2023Updated 2 years ago
- Antibody-Specific Epitope Mapping☆17Sep 10, 2025Updated 6 months ago
- STARLING - conSTruction of intrinsicAlly disoRdered proteins ensembles efficientLy vIa multi-dimeNsional Generative models☆47Dec 23, 2025Updated 2 months ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆72Jan 31, 2024Updated 2 years ago
- ☆27Aug 8, 2025Updated 7 months ago
- ☆15Dec 4, 2023Updated 2 years ago
- Making Protein Design accessible to all via Google Colab!☆894Mar 10, 2026Updated last week
- MEGADOCK on Google Colaboratory☆20Oct 2, 2023Updated 2 years ago
- Protein structure datasets for machine learning.☆115Apr 22, 2025Updated 11 months ago
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated 3 weeks ago
- ☆22Nov 26, 2025Updated 3 months ago
- ☆26Dec 5, 2025Updated 3 months ago
- User friendly and accurate binder design pipeline☆1,048Mar 13, 2026Updated last week
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆190Jun 24, 2024Updated last year
- A toolkit developed to predict and analyze PROTAC-mediated ternary complexes using AlphaFold3 and Boltz-1.☆41Jul 17, 2025Updated 8 months ago
- ☆33Nov 22, 2023Updated 2 years ago
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆518Oct 21, 2025Updated 5 months ago
- Building more accurate protein structures from backbone torsion angles☆15Mar 21, 2025Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆65Feb 2, 2026Updated last month
- ☆395Aug 7, 2024Updated last year