Alternatives and similar repositories for PepFun2

Users that are interested in PepFun2 are comparing it to the libraries listed below

• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆35Updated 7 years ago
• amp91 / PeptideModels
  Code for peptide ligand design with machine learning models.
  ☆28Updated last year
• Jnelen / DiffDockHPC
  DiffDock implementation that adds support for HPC execution using Slurm and Singularity
  ☆26Updated 7 months ago
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆32Updated last year
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆44Updated 3 years ago
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆40Updated 6 months ago
• novonordisk-research / pepfunn
  Python package for the analysis of natural and modified peptides using a set of modules to study their sequences
  ☆44Updated last month
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆48Updated 8 months ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated 5 months ago
• Protein-Engineering-Framework / PyPEF
  PyPEF – Pythonic Protein Engineering Framework
  ☆24Updated 3 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆54Updated 4 months ago
• cryoEM-CNIO / BinderFlow
  Code for running BinderFlow
  ☆55Updated last month
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆60Updated 3 months ago
• molML / peptidy
  The official codebase of peptidy, a peptide processing tool for machine learning.
  ☆36Updated 8 months ago
• vmullig / ndm1_design_scripts
  Scripts used for Mulligan et al. (2020): Computationally-designed peptide macrocycle inhibitors of New Delhi metallo-beta-lactamase 1
  ☆19Updated 4 years ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆35Updated 2 years ago
• Boehringer-Ingelheim / pyPept
  pyPept: a python library to generate atomistic 2D and 3D representations of peptides
  ☆85Updated last month
• guyuehuo / opendock
  ☆53Updated 2 weeks ago
• JieDuTQS / PPDOCK
  ☆22Updated 8 months ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆42Updated last year
• molecularmodelingsection / SuMD
  Python code to run Supervised Molecular Dynamics (SuMD) simulations
  ☆16Updated last year
• skalyaanamoorthy / PSLMs
  ☆21Updated last year
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆28Updated 2 years ago
• charlesxu90 / helm-gpt
  HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer
  ☆30Updated last year
• ld139 / ApoDock_public
  Code for ApoDock
  ☆21Updated 8 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆76Updated 2 months ago
• Nucleus2014 / protease-gcnn-pytorch
  ☆21Updated 2 years ago
• KexinZhangResearch / PhysDock
  Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction
  ☆84Updated 2 months ago
• Furman-Lab / PatchMAN
  ☆27Updated 2 weeks ago
• silicogenesis / protkit
  A Unified Approach to Protein Engineering
  ☆42Updated last year